Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1020 307 1e-78 seq417 230 2e-55 seq1832 167 2e-36 seq158 123 2e-23 seq148 111 1e-19 seq3 102 8e-17 >seq1020 Length=850931 Score = 307 bits (340), Expect = 1e-78 Identities = 608/889 (68%), Gaps = 22/889 (2%) Strand=Plus/Minus Query 11333 CCCATCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGAT 11392 |||||| | |||||||| | |||| || ||| ||| |||||||| ||||| ||||| Sbjct 339053 CCCATCCTCTGATATTCGCCTACTC-TC-TTCTCAAAG-TTAGTCTTCCCTTCCAGTGAA 338997 Query 11393 ATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCT 11452 |||| |||||||||| ||| ||||| | ||| |||| || || || |||||| ||| Sbjct 338996 ATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCAAAACCTAGCTCC 338937 Query 11453 GTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCT 11512 | | || ||||| ||||| || |||||||| |||||| |||||||| || Sbjct 338936 AGCATAAGTCGGTCTGCCACGAACTCAATATACTGCTTCATTAATGTGCAATTCATCCCA 338877 Query 11513 ATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATG 11572 || || | ||| || | || | || | ||||||| ||||| ||| |||| ||| Sbjct 338876 ATGAGCTTCACAGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCGAACGGCATTAATA 338817 Query 11573 ATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACAC 11632 ||||| | | | | || || ||| || | | ||||| ||||| | || Sbjct 338816 ATTATTTCCTTCACTCTCTGCTCGGAAGGTTTGTGGACCAGGTGTTTGAACATCAGGCAG 338757 Query 11633 GCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCG 11692 ||||| ||||| |||||||| || ||||| || | |||||||| ||||| | | || Sbjct 338756 GCAAAGTCACAGTGTAAACCCTCATCTCTGCTAGTAAGTTCATTGGAAAAGGCGAGGCCA 338697 Query 11693 GGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATT 11752 ||||||| || ||||| || | ||| ||||| | ||||| ||||||||||||| ||| Sbjct 338696 GGCATCAGGCCACGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAGGATT 338637 Query 11753 CCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACC----TTGTTGCTAGAT 11806 || |||||||| ||||| || || || | ||| || || |||| |||| | || Sbjct 338636 CCTTCCACAGCAGCAAAAGCCACAACCCGTTCCCCGTAGGTACCCTCTTTGTCCCCAG-- 338579 Query 11807 ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT- 11865 |||| | ||||||||| || ||||| ||||| || |||||| || || ||||| Sbjct 338578 -TCCAATGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCGATGGCGTTG 338520 Query 11866 -AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACA 11924 | | |||| | ||||| | |||| | | ||| || || | | | ||| |||| Sbjct 338519 AAGAGAAATTC--CCTTTCTTTGGAATCTTTAATATAAGTGTCAGTGAGGAGACTGTACA 338462 Query 11925 TTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAAC 11984 | || ||||| || |||||||| || | ||| || |||||||||| || || |||| | Sbjct 338461 TCTCAGAATGGATGTTTTCCATGGCAAATTGGAAGTCATAGAAACAGCGGGCTTCTGTAA 338402 Query 11985 ACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATG 12044 ||| || || ||| | ||| | || || |||||||| || |||||||| | || Sbjct 338401 TCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACGATGCCATCACTCGCTG 338342 Query 12045 CAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAG--TTAATTTA-TCCC 12101 |||| || || || | || |||||||||| | || || || || | | |||| Sbjct 338341 CAAAGAAAGCCAGAACGTGGGATATAAAGTATCTCTCCTC---AGGCTTCAGGGATTCCC 338285 Query 12102 AATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATT 12161 | | | | || || || | ||| || | |||| | |||||||| ||| | | || Sbjct 338284 AGTGCTGAATGTCCTTGGAAAGATCCACCTTTTCAGCTGTCCAAAAGGAAGCCTCAGCTT 338225 Query 12162 GTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210 |||||| | | ||| |||||| |||| || ||||| || || || Sbjct 338224 TCTTATACCTCTGCCAAATATCACAGTACTCGATGGGGAAGATGACAAA 338176 >seq417 Length=2207251 Score = 230 bits (254), Expect = 2e-55 Identities = 456/668 (68%), Gaps = 9/668 (1%) Strand=Plus/Plus Query 11333 CCCATCTTTTGATATTCACTAACTCGTCGTTCGAAAAAA-TTAGTCTTACCTTCTAGTGA 11391 |||||| | ||||| || | |||| || | ||| || |||||||| ||||| ||||| Sbjct 863671 CCCATCCTCTGATACTCGCCTACTC-TCTTCACAAAGAAGTTAGTCTTCCCTTCCAGTGA 863729 Query 11392 TATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTC 11451 |||| ||||||| || ||| ||||| | ||| ||| || || || |||||| ||| Sbjct 863730 AATATTCTCCATATAGTCAAATGGATTTTCTACTCCGAAAACCTTGCCAAAACCTAGCTC 863789 Query 11452 TGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACC 11511 | | || ||||| ||||| || |||||||| |||||| |||||||| || Sbjct 863790 CAGCATAAGTCGGTCTGCCACGAACTCAATATACTGCTTCATTAACATGCAATTCATCCC 863849 Query 11512 TATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAAT 11571 || | | || || | || | | | || ||| ||||| | ||| |||| ||| Sbjct 863850 AATGAACTTCATGGGCAAGGCCTCCTTGATGAATCCCTGCTCTATCTGAACGGCATTAAT 863909 Query 11572 GATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACA 11631 ||||| | | | | | || || ||| || | | ||||| ||||| | || Sbjct 863910 AATTATTTCCTTCACTCCCTGCTCGGAAGGTTTGTGGACCAGGTGTTTGAACATCAGGCA 863969 Query 11632 CGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCC 11691 ||||| ||||| |||||||| || ||||| || || |||||||| ||||| || | || Sbjct 863970 GGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCC 864029 Query 11692 GGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATAT 11751 ||||||| | ||||| || | ||| ||||| | |||| |||||||||||||| || Sbjct 864030 AGGCATCAGGCTGCGTTTCTTGAGCCAGAATATCGACTCAAAAGAACCAGAAAAGAAGAT 864089 Query 11752 TCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TA-CCTTGTTGCTAGATAT 11808 ||| |||||||| ||||| | || || | ||| || || || ||| ||| || Sbjct 864090 TCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCCTCTTTGTCCCCGAT 864149 Query 11809 CCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT--A 11866 ||| |||||| | || | ||| ||||| || |||||| || || ||||| | Sbjct 864150 CCAACGCAAGGCCCAGGCTGCCTCCTTCTTTACACAAGGCATTGTCTCCATGGCGTTGAA 864209 Query 11867 AATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATT 11926 | |||| | ||||| |||| | | || || || || | | ||||||||| Sbjct 864210 GAGAAATTC--CCTTTCTTCGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATC 864267 Query 11927 TCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC 11986 || |||||||| |||||||| | ||||| || ||||||||||| || || |||| | | Sbjct 864268 TCAGAATGAATGTTTTCCATGGTAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATC 864327 Query 11987 TGTACATC 11994 || || || Sbjct 864328 TGAACTTC 864335 >seq1832 Length=302895 Score = 167 bits (184), Expect = 2e-36 Identities = 580/891 (65%), Gaps = 22/891 (2%) Strand=Plus/Plus Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTA 11387 ||| || ||| | ||||| |||| ||| || | || || | |||||||| ||||| | Sbjct 206452 CACTCCTATCCTCTGATACTCACCTCCTC-TCTTCTCAAAGAGGTTAGTCTTCCCTTCCA 206510 Query 11388 GTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTA 11447 |||| |||| |||||||| | ||| ||||| | ||| || | || || | |||||| Sbjct 206511 GTGAAATATTCTCCATAAGGTCAAATGGATTTTCTACTCTGGAAACCTTGCTAAAACCTA 206570 Query 11448 ACTCTGTTAATAA-TCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTC 11506 || | ||| || ||||| | |||||| |||||||| ||||| |||||| Sbjct 206571 GTTCC-TGCCTAAGTCAGTCTGCCATGAATTCAATATACTGCTTTATTAACATGCAATTC 206629 Query 11507 ATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCA 11566 || || || || | || ||| | || ||| | ||||||| ||||| |||| || Sbjct 206630 ATCCCAATGAGCTTCAGCGGCAAGGCCTCTGGGAGGAACTCCTGGTCTATCCTAACGGCT 206689 Query 11567 TCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATT 11626 | || ||||| | | | | || || ||| ||| | | ||||| ||||| Sbjct 206690 TTGATAATTATTTCCTTCACTCTCTGCTCTGAAGGTTTATGGACCAGGTGTTTGAACATC 206749 Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAAT-GT 11685 | | ||||| |||| |||||||| || ||||| || || || ||||| ||||| || Sbjct 206750 AGGTAGGCAAAGTCACGGTGTAAACCCTCATCTCTGCTAATAAGCTCATTGGAAAACAGT 206809 Query 11686 TAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAA 11745 | || ||||||| | | ||| || | ||| |||| ||| | |||||| |||| Sbjct 206810 GAGGCCAGGCATCAGGCTGCATTTCTTGAGCCAGTATATCAACGCAGAAGAACCAAAAAA 206869 Query 11746 GAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TA-CCTTGTTGCT 11802 | | ||||| ||| || ||||| | || || | ||| || || || ||| ||| Sbjct 206870 GGAGATTCCTTCCGTGGCAGCAAAGTCCACAACCCATTCCCCGTAGGTAGCCTCTTTGTC 206929 Query 11803 AGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGC 11862 | ||| | |||||||| || ||||| || | || |||||| || || | Sbjct 206930 CCCAACCCAATGCAAGGCCCAATTTGCCTTCTTCCTTCCACAAGGCATTGTCTCCATGGT 206989 Query 11863 GTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATA 11922 ||| || | | ||| ||| | | ||||| ||| || || | | | |||| | Sbjct 206990 GTTGAAGAGAA--ATTCCCTCTCTTTGGAATCTTATATAAGTGTCAGTGAGGAGACTACA 207047 Query 11923 CATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGA 11982 ||| || ||||| || |||||||| || ||||| || ||||||||||| | || |||| Sbjct 207048 CATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGGCTTCTGT 207107 Query 11983 ACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGA 12042 ||| || || | | | ||| | || || |||||||| || ||| |||| | Sbjct 207108 CATCTGAACCTCTTGGCCACACCACTCCACCAAGTTTTCATTTACTATGCCAACACTTGC 207167 Query 12043 TGCAAAAAATGCTA------GTATATGTTTTATAAAGTATTTTTCGTCTTTAG--TTAAT 12094 |||| || || | | | || |||||| || | || || | || || | Sbjct 207168 CACAAAGAAAGCCAGAACGTGAACGTGGGGTATAAA--ATCTCTC-TCCTCAGGCTTCAG 207224 Query 12095 TTA-TCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGC 12153 | ||||| | | | || || || | || || |||| | | ||||||||| || Sbjct 207225 GGATTCCCAGTGCTGAATGTCCTTGGAAAGATTCACCTCTTTAGCTGTCCAAAAAGAAGC 207284 Query 12154 CACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAAT 12204 | | | || ||| |||| | ||| | ||||||||||| |||||||| || Sbjct 207285 CTCAGCTTTCTTACACATCTGCCAAAGATCATGATACTCCATAGGGAAGAT 207335 >seq158 Length=7371824 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||||||||| | |||| ||| | Sbjct 3463988 CTTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCT 3463929 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 3463928 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAAG 3463869 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 3463868 CCACAACTCTTTCCCC 3463853 >seq148 Length=4816872 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| ||||| || | || ||||||| || ||||| || Sbjct 2362151 TCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGGCCGCGTTTCTTG 2362210 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| ||||| |||||||| ||||| || Sbjct 2362211 AGCCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCC 2362270 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 2362271 ACAACCCGTTCTCC 2362284 >seq3 Length=9835568 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| || ||||| ||||| ||||||||| Sbjct 152606 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 152665 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || ||||||||||| || || || || | Sbjct 152666 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 152725 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 152726 CTGTTTCTTATACCAT 152741 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| ||||| |||||||||||||| ||||| | || |||| | | | || | || Sbjct 150104 TCCAGCCGTAGAAATGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCGATGTGGATGT 150163 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982 ||| ||||| |||||||| || || |||||||| || |||||||| | | || || Sbjct 150164 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCTTAAGAACGGTTT 150223 Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTT 37019 | || || || ||||| || || ||||| | ||| || Sbjct 150224 TCTGTGAAATTTCCCACACGGTCTTATAAAGTTGCTT 150260 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || || || || || | || ||||| ||||| | ||||| || || || | | || Sbjct 169781 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 169840 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 |||||||| || || |||| ||||| | ||||||| || | ||| |||||||| | | Sbjct 169841 TATGTTTCAATAGCAGCATCAATATCTTCTGCGTGAATCCCCACAGACACCCTCATCAAC 169900 Query 38533 ATATGTTGTGGTCTTTCT 38550 |||||||||||||||||| Sbjct 169901 ATATGTTGTGGTCTTTCT 169918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468502000411920