Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq1020 123 2e-23 seq417 118 8e-22 seq148 84.2 2e-11 >seq1020 Length=850931 Score = 123 bits (136), Expect = 2e-23 Identities = 391/590 (66%), Gaps = 31/590 (5%) Strand=Plus/Plus Query 22347 GTACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGGTGGATCTTAGTACTGATGT 22406 ||| ||||| || | || || |||||||| | ||| ||||||||||| | || | Sbjct 338217 GTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAAAAGGTGGATCTTTCCAAGGACAT 338276 Query 22407 ACGCCATTGGACAGAAAAACTGACCGAGGCTGAGCGCAGGTTC---ATGTCTCACATACT 22463 | || ||| ||| |||| || ||||| || | | || || ||| | || Sbjct 338277 TCAGCACTGG---GAATCCCTGA---AGCCTGAGGAGAGATACTTTATATCCCACGTTCT 338330 Query 22464 GGCATTCTTTGCAATGGCAGATGGCATTGTAGGCGACAACCTTGTGT-GCAATTTCGCAA 22522 ||| ||||||||| | |||||||| ||| || ||| | ||| || ||| || | Sbjct 338331 GGCTTTCTTTGCAGCGAGTGATGGCATCGTAAATGAAAACTTGGTGGAGCGGTTTAGCCA 338390 Query 22523 AAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAATGGAAA 22582 | ||| || | ||| |||||||| | |||||||| || || | || ||||||| Sbjct 338391 A-GAAGTTCAG---ATTACAGAAGCCCGCTGTTTCTATGACTTCCAATTTGCCATGGAAA 338446 Query 22583 ATATACATGCTGAAATGTATACTCAGCTGATTATCACATTAGTAGCTAAAGAG----AAT 22638 | || ||| |||| ||||| | || || | | ||| ||| || |||||| || Sbjct 338447 ACATCCATTCTGAGATGTACAGTCTCCTCACTGACAC-TTA-TAT-TAAAGATTCCAAAG 338503 Query 22639 CAAGCCGCATTGTTTTCAGCAGC-TGAAGATA-TGCCATGTGTTAAAGCCAAGGCACAGT 22696 ||| || | |||| | | | ||| | |||| ||||| || |||||| | | Sbjct 338504 AAAGGGAATTTCTCTTCAACGCCATCGAGACAATGCCTTGTGTAAAGAAGAAGGCAGATT 338563 Query 22697 GGGCTGCACAATGG-CTGAATGCCACACATAAGT---CTATCGCAACACGTCTCTTGGCC 22752 |||| || ||| ||| | ||| | | | ||| | | ||| | |||| Sbjct 338564 GGGCCTTGCATTGGACTG---GGGACAAAGAGGGTACCTACGGGGA-ACGGGTTGTGGCT 338619 Query 22753 TTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTGAAG 22812 ||||| ||||| ||||| || | |||||||| || ||||| | ||||||||||| ||| Sbjct 338620 TTTGCTGCTGTGGAAGGAATCCTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTCAAG 338679 Query 22813 AAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAAGGT 22872 |||||| || ||||| || | || |||||||| || | | |||| | || || ||| Sbjct 338680 AAACGTGGCCTGATGCCTGGCCTCGCCTTTTCCAATGAACTTACTAGCAGAGATGAGGGT 338739 Query 22873 CTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACC 22922 |||||||||||||||| || || |||| | || ||| ||||||| Sbjct 338740 TTACACTGTGACTTTGCCTGCCTGATGTTCAAACACCTGGTCCACAAACC 338789 >seq417 Length=2207251 Score = 118 bits (130), Expect = 8e-22 Identities = 131/175 (75%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 ||| |||||| ||||| ||||| || | |||||||| || |||| | | |||||||||| Sbjct 864112 TGGACTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGAGTCGATATTCTGGC 864053 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 | |||||||| || ||||| || | |||||||||| || | |||||| | || | Sbjct 864052 TCAAGAAACGCAGCCTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGATG 863993 Query 22868 AAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACC 22922 | ||| |||||||||||||||| || || |||| | || ||| ||||||| Sbjct 863992 AGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAACACCTGGTCCACAAACC 863938 >seq148 Length=4816872 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||| ||||| ||||| ||||| || | |||||||| || |||||| | |||||||||| Sbjct 2362271 TGGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCGTCGATATTCTGGC 2362212 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 | |||||||| || ||||| || | | |||||||| || | |||||| | || | Sbjct 2362211 TCAAGAAACGCGGCCTGATGCCTGGCCTCACCTTTTCCAATGAACTTATTAGCAGAGATG 2362152 Query 22868 A 22868 | Sbjct 2362151 A 2362151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356216698162879