Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq949 96.9 3e-15 seq47 96.9 3e-15 seq33 95.1 1e-14 seq1114 93.3 4e-14 seq1198 91.5 1e-13 seq530 89.7 5e-13 seq59 86.0 6e-12 >seq949 Length=596474 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||| | ||| | ||| | || |||||||| || ||||| ||||| | |||| Sbjct 262165 ACGGAGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCC 262224 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| ||||| || |||||| |||| || | ||||| || || || ||||| ||||| Sbjct 262225 ATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTT 262284 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| || || | | ||| | ||||| ||||||||||||| | ||| | Sbjct 262285 ATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGAT 262344 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||||| || || || || || ||||| Sbjct 262345 GGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 262380 >seq47 Length=4803410 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 || |||| || | ||| | || ||||| || || ||||| || || || |||| | Sbjct 4289418 AAGCGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 4289477 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||| || |||||||| || ||| |||||| | ||||| || || || ||||| || Sbjct 4289478 CCGTCCTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCC 4289537 Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726 ||||| ||| || || | | || | ||||| ||||||||||||| | || Sbjct 4289538 TTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTG 4289597 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | |||||||||||||| || || ||||| || ||||| Sbjct 4289598 ATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 4289635 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | |||| || | ||| | || ||||| || || ||||| || || Sbjct 4289636 GCCCCCTCTGAGGCGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 4289695 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| | ||| || ||||| || || ||| |||||| | ||||| || || || Sbjct 4289696 CAGGGTGCGCCCGTCCTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGG 4289755 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || | ||||| |||||||||| Sbjct 4289756 GATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 4289815 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | |||||||||||||| || || ||||| || ||||| Sbjct 4289816 CTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 4289863 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || ||||| || || ||||| || || || |||| | | Sbjct 4289877 CGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCG 4289936 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || || ||| |||||| | ||||| || || || ||||| |||||| Sbjct 4289937 TCCTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTG 4289996 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| ||||||||||||| | ||| | Sbjct 4289997 TCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 4290056 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| |||||||| || || || || || ||||| Sbjct 4290057 GTCTTACCGGTCAAGGTCTTCACAAAGATCTGCAT 4290091 >seq33 Length=6086033 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| || ||||| ||||||||||| || || || |||| || | ||||| || || Sbjct 2214793 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCA-TCTTCCAGTTG 2214851 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| | ||||| | |||||||| ||||| || ||||| || || ||| | | Sbjct 2214852 CTTGCCAGCAAATATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC-CTGAATCT 2214910 Query 139681 TTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 ||| |||| | ||||| ||| | | ||| || ||||| | || | ||||| || | Sbjct 2214911 TTGCCTTTACATTTTCCATTGTACCCGAGGGTTCAACCTCGAGAGTGATGGTCTTCCCCG 2214970 Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764 | | ||||| ||||| || ||||| Sbjct 2214971 TAAGGGTTTTCACGAAAATCTGCAT 2214995 >seq1114 Length=1661397 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||| | ||| | ||| | || |||||||| || ||||| ||||| | |||| Sbjct 1502913 ACGGAGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCC 1502972 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| ||||| || |||||| |||| || | ||||| || || || ||||| ||||| Sbjct 1502973 ATCTTCCAGCTGCTTGCCAGCAAAGATAAGTCTCTGCTGGTCAGGGGGGATGCCCTCTTT 1503032 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| || || | | ||| || || ||||||||||||| | ||| | Sbjct 1503033 ATCTTGGATCTTCGCCTTCACGTTTTCAGTGGTATCACTGGGCTCCACCTCCAGGGTGAT 1503092 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||||| || || ||||| || ||||| Sbjct 1503093 GGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1503128 >seq1198 Length=804178 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | ||| | ||| | ||| | || |||||||| || || || ||||| Sbjct 573940 GCCACCTCTCAGACGGAGAACCAGGTGGAGAGTTGACTCTTTCTGGATATTGTAATCAGA 573881 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||||| ||||| || |||||| |||| || | ||||| || || || Sbjct 573880 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGG 573821 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| ||||| || ||| || || | | ||| ||||| |||||||||| Sbjct 573820 GATGCCCTCTTTATCTTGGATCTTCGCCTTCACGTTTTCAGTGGTGTCACTGGGCTCCAC 573761 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||||||||| | || || ||||| || ||||| Sbjct 573760 CTCCAGGGTGATGGTCTTGCCGGTTAGGGTCTTCACGAAGATCTGCAT 573713 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| ||| | ||| | || |||||||| || ||||||||||| | ||| Sbjct 573699 CGCAGAACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAATCAGAAAGAGTGTGGCCA 573640 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| | || || | ||||| || || || ||||| | ||| Sbjct 573639 TCTTCCAGCTGCTTGCCTGCAAAAATGAGCCTCTGCTGGTCAGGGGGGATGCCCTGTTTA 573580 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | ||| | ||||| ||||||| ||||| | | | | Sbjct 573579 TCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCTACCTCTAGGTTGATG 573520 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||||| || || ||||| || ||||| Sbjct 573519 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 573485 >seq530 Length=2118653 Score = 89.7 bits (98), Expect = 5e-13 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| || ||||| ||||||||||| || || || |||| || | ||||| || || Sbjct 63810 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCA-TCTTCCAGTTG 63868 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| ||||||| | |||||||| |||| || ||||| || || ||| | | Sbjct 63869 CTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGAAATTCCTTCCTTATC-CTGAATCT 63927 Query 139681 TTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 | | |||| | ||| | ||| || | ||| || ||||| | || | ||||| || | Sbjct 63928 TGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTGATGGTCTTCCCCG 63987 Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764 | | ||||| ||||| || ||||| Sbjct 63988 TAAGGGTTTTCACGAAAATCTGCAT 64012 >seq59 Length=2579055 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| || ||||| ||||||||||| || || || |||| || | ||||| || || Sbjct 1130476 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCA-TCTTCCAGTTG 1130534 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| ||||||| | |||||||| ||||| || ||||| || || ||| | | Sbjct 1130535 CTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC-CTGAATCT 1130593 Query 139681 TTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 | | |||| | ||| | ||| || | | | || ||| | | || | ||||| || | Sbjct 1130594 TGGCCTTTACATTTTCTATTGTATCCGAGCGTTCAACCGCGAGAGTGATGGTCTTCCCCG 1130653 Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764 | | ||||| ||||| || ||||| Sbjct 1130654 TAAGGGTTTTCACGAAAATCTGCAT 1130678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496039860285600