Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1020 253 2e-62 seq417 178 1e-39 seq1832 131 2e-25 seq148 105 6e-18 >seq1020 Length=850931 Score = 253 bits (280), Expect = 2e-62 Identities = 598/896 (67%), Gaps = 13/896 (1%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || | ||||| | Sbjct 339104 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCATTCCCATCCT 339046 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 |||||||| | ||||| || |||||| ||||| || ||||||||||| ||||| || Sbjct 339045 CTGATATTCGCCTACTCTCTTCTCAAAG---TTAGTCTTCCCTTCCAGTGAAATATTCTC 338989 Query 13643 CATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 13702 |||||| |||||||||||| | | || || || || ||||||| || | | | Sbjct 338988 CATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCAAAACCTAGCTCCAGCATAAG 338929 Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762 || || || | ||||||||||| || |||||| |||||||| || || || || Sbjct 338928 TCGGTCTGCCACGAACTCAATATACTGCTTCATTAATGTGCAATTCATCCCAATGAGCTT 338869 Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT 13822 ||||| | | || | || || | ||||| || || | | ||||| || Sbjct 338868 CACAGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCGAACGGCAT---TAATAATTAT 338812 Query 13823 TGTAATAA---TCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13879 | | | ||| | ||||| | || ||||| || || | || ||||| Sbjct 338811 TTCCTTCACTCTCTGCTCGGAAGGTTTGTGGACCAGGTGTTTGAACATCAGGCAGGCAAA 338752 Query 13880 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13939 ||||| || | ||||||||||| ||| ||||||| || ||||| | | || ||||| Sbjct 338751 GTCACAGTGTAAACCCTCATCTCTGCTAGTAAGTTCATTGGAAAAGGCGAGGCCAGGCAT 338692 Query 13940 CAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTC 13999 || || ||||| || | ||| ||||| | ||||| || || ||||||| ||||| || Sbjct 338691 CAGGCCACGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAGGATTCCTTC 338632 Query 14000 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14059 || |||||||| || | | ||||| || | | | | ||||| | |||| | Sbjct 338631 CACAGCAGCAAAAGCCACAACCCGTTCCCCGTAGGTACCCTCTTTGTCCCCAGTCCAATG 338572 Query 14060 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATA 14119 ||||| || | || || || | | || |||||| || || || || || | | | Sbjct 338571 CAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCGATGGCGTTGAAGAGAAA 338512 Query 14120 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14179 |||| | ||||| | | | ||| || || ||| | || | || ||||| ||||| || Sbjct 338511 TTCCCTTTCTTTGGAATCTTTAATATAAGTGTCAGTGAGGAGACTGTACATCTCAGAATG 338452 Query 14180 TATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC 14239 ||||||||||| || | || || |||| || || | ||||| | || ||||| Sbjct 338451 GATGTTTTCCATGGCAAATTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 338392 Query 14240 CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGC 14299 | ||| | || |||| |||||||| || || |||||||| |||||||| || || Sbjct 338391 TTGGCTAAACCGCTCCACCAAGTTTTCATTTACGATGCCATCACTCGCTGCAAAGAAAGC 338332 Query 14300 CAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT-CGGATAAAT 14358 || | || ||||||||| ||| ||| || || || ||| | | || | | Sbjct 338331 CAGAACGTGGGATATAAAGTATCTCTCCTCAGGCTTCAGGGATTCCCAGTGCTGA-ATGT 338273 Query 14359 CCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATAC 14414 |||| |||||||| || | ||| |||||||||| ||| ||||||| |||||| Sbjct 338272 CCTTGGAAAGATCCACCTTTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATAC 338217 >seq417 Length=2207251 Score = 178 bits (196), Expect = 1e-39 Identities = 466/706 (66%), Gaps = 10/706 (1%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || | ||||| | Sbjct 863620 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCATTCCCATCCT 863678 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | ||||| || ||||||||||||| || ||||||||||| ||||| || Sbjct 863679 CTGATACTCGCCTACTCTCTTCACAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 863738 Query 13643 CATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 13702 |||| | |||||||||||| | || || || || ||||||| || | | | Sbjct 863739 CATATAGTCAAATGGATTTTCTACTCCGAAAACCTTGCCAAAACCTAGCTCCAGCATAAG 863798 Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762 || || || | ||||||||||| || |||||| |||||||| || || | || Sbjct 863799 TCGGTCTGCCACGAACTCAATATACTGCTTCATTAACATGCAATTCATCCCAATGAACTT 863858 Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT 13822 | || | | | | ||| | | ||||| || || | | ||||| || Sbjct 863859 CATGGGCAAGGCCTCCTTGATGAATCCCTGCTCTATCTGAACGGCAT---TAATAATTAT 863915 Query 13823 TGTAATAATCTCATTAGAAGGAGGATATTTT----AGATGTTTAAAAATTAAACACGCAA 13878 | | | ||| | ||| | | | | || ||||| || || | || |||| Sbjct 863916 TTCCTTCA-CTCCCTGCTCGGAAGGTTTGTGGACCAGGTGTTTGAACATCAGGCAGGCAA 863974 Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938 | ||||| || | ||||||||||| ||||||||||| || ||||| || | || |||| Sbjct 863975 AGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCA 864034 Query 13939 TCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCT 13998 ||| | ||||| || | ||| ||||| | |||| || || |||||||| ||||| | Sbjct 864035 TCAGGCTGCGTTTCTTGAGCCAGAATATCGACTCAAAAGAACCAGAAAAGAAGATTCCTT 864094 Query 13999 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATT 14058 | || |||||||| | | | ||||| || | | || | ||||| | ||||| Sbjct 864095 CCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCCTCTTTGTCCCCGATCCAAC 864154 Query 14059 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAAT 14118 ||||| | | | || || | | || |||||| || || || || || | | Sbjct 864155 GCAAGGCCCAGGCTGCCTCCTTCTTTACACAAGGCATTGTCTCCATGGCGTTGAAGAGAA 864214 Query 14119 ATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGT 14178 ||||| | |||| | | | |||||| || ||||| || | |||||||| ||||| | Sbjct 864215 ATTCCCTTTCTTCGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATCTCAGAAT 864274 Query 14179 GTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC 14224 | ||||||||||| | || || || ||||| || || | ||||| Sbjct 864275 GAATGTTTTCCATGGTAATTTGGAAGCCATAGAAACAGCGGGCTTC 864320 >seq1832 Length=302895 Score = 131 bits (144), Expect = 2e-25 Identities = 551/863 (64%), Gaps = 19/863 (2%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || || || | ||||| |||| |||| || ||||||| |||||| || ||| Sbjct 206447 GACATCACTCCTATCCTCTGATACTCACCTCCTCTCTTCTCAAAGAGGTTAGTCTTCCCT 206506 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAA 13685 |||||||| ||||| ||||||| |||||||||||| | | | || || | || Sbjct 206507 TCCAGTGAAATATTCTCCATAAGGTCAAATGGATTTTCTACTCTGGAAACCTTGCTAAAA 206566 Query 13686 CCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13745 |||||||| | || || || || || |||||||| || ||||| ||| Sbjct 206567 CCTAGTTCCTGCCTAAGTCAGTCTGCCATGAATTCAATATACTGCTTTATTAACATGCAA 206626 Query 13746 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 13805 ||||| || || || || | || | | | | || || | ||||| | | Sbjct 206627 TTCATCCCAATGAGCTTCAGCGGCAAGGCCTCTGGGAGGAACTCCTGGTCTAT---CCTA 206683 Query 13806 GCCTCTTTTATAATAATT---GTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTA 13862 | |||| ||||| ||| | | ||| | ||||| || || ||||| Sbjct 206684 ACGGCTTTGATAATTATTTCCTTCACTCTCTGCTCTGAAGGTTTATGGACCAGGTGTTTG 206743 Query 13863 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 13922 || || | | ||||| |||| || | ||||||||||| |||||||| || || ||| Sbjct 206744 AACATCAGGTAGGCAAAGTCACGGTGTAAACCCTCATCTCTGCTAATAAGCTCATTGGAA 206803 Query 13923 AA-TGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCC 13981 || || | || ||||||| | | ||| || | ||| |||| ||| | || || Sbjct 206804 AACAGTGAGGCCAGGCATCAGGCTGCATTTCTTGAGCCAGTATATCAACGCAGAAGAACC 206863 Query 13982 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT 14041 ||||| | ||||| || |||||||| | | | | ||| || | | || | Sbjct 206864 AAAAAAGGAGATTCCTTCCGTGGCAGCAAAGTCCACAACCCATTCCCCGTAGGTAGCCTC 206923 Query 14042 TTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTC 14101 ||||| | | ||| | ||||| | | || || | | || |||||| || Sbjct 206924 TTTGTCCCCAACCCAATGCAAGGCCCAATTTGCCTTCTTCCTTCCACAAGGCATTGTCTC 206983 Query 14102 AATAGCATTAAATAAATATTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTA 14160 || | || || | | ||||| ||||||| | | ||| || || || ||| | || | Sbjct 206984 CATGGTGTTGAAGAGAAATTCCCTCTCTTTGGAATCTT---ATATAAGTGTCAGTGAGGA 207040 Query 14161 AGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAG 14220 ||| |||| ||||| || ||||||||||| || || || || ||||| || || | | Sbjct 207041 GACTACACATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGG 207100 Query 14221 CTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCAT 14280 |||| | | || || || | | | | || |||| |||||||| ||||| ||| Sbjct 207101 CTTCTGTCATCTGAACCTCTTGGCCACACCACTCCACCAAGTTTTCATTTACTATGCCAA 207160 Query 14281 CACTAGCTGCAAAAAATGCCA------ATATGTTTTTAATAAAGTATTGCTCTTCATTGT 14334 |||| || |||| || |||| | || ||||| | | ||| ||| | Sbjct 207161 CACTTGCCACAAAGAAAGCCAGAACGTGAACGTGGGGTATAAAATCTCTCTCCTCAGGCT 207220 Query 14335 TGAGTTTTTTCCAAT-CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAA 14393 | || || ||| | | || | ||||| ||||||| || || | | ||||||||||| Sbjct 207221 TCAGGGATTCCCAGTGCTGA-ATGTCCTTGGAAAGATTCACCTCTTTAGCTGTCCAAAAA 207279 Query 14394 CTAGCGACAGCTTTTTTATACAT 14416 ||| ||||||| ||| |||| Sbjct 207280 GAAGCCTCAGCTTTCTTACACAT 207302 >seq148 Length=4816872 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || ||||| || | || ||||||| || ||||| | Sbjct 2362149 CCTCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGGCCGCGTTTCT 2362208 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || || |||||||| ||||| || || |||||||| | Sbjct 2362209 TGAGCCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 2362268 Query 14014 CTATTAATCGTTCTCC 14029 | | | |||||||| Sbjct 2362269 CCACAACCCGTTCTCC 2362284 Score = 100 bits (110), Expect = 3e-16 Identities = 107/139 (77%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 2360427 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 2360485 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 2360486 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 2360545 Query 13643 CATAAAATCAAATGGATTT 13661 |||||| |||||||||||| Sbjct 2360546 CATAAAGTCAAATGGATTT 2360564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479704655236200