Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1020 251 7e-62 seq417 159 3e-34 seq1832 123 2e-23 seq148 102 8e-17 >seq1020 Length=850931 Score = 251 bits (278), Expect = 7e-62 Identities = 598/897 (67%), Gaps = 15/897 (2%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370 || || ||| |||| || | |||| ||| || | || | | || || | ||||| | Sbjct 339104 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCATTCCCATCCT 339046 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 |||||||| | ||||| || ||||| |||||| || ||||||||||| ||||| || Sbjct 339045 CTGATATTCGCCTACTCTCTTCTCAAA---GTTAGTCTTCCCTTCCAGTGAAATATTCTC 338989 Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490 |||||| || ||||||||| | | || || || || ||||||| || | | | Sbjct 338988 CATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCAAAACCTAGCTCCAGCATAAG 338929 Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550 || || || | ||||||||||| || |||||| |||||||| || || || || Sbjct 338928 TCGGTCTGCCACGAACTCAATATACTGCTTCATTAATGTGCAATTCATCCCAATGAGCTT 338869 Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 13610 ||||| | | || | || || | ||||| || || | | ||||| || Sbjct 338868 CACAGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCGAACGGCAT---TAATAATTAT 338812 Query 13611 ---CTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13667 ||| | | | | ||||| | || ||||| || || | || ||||| Sbjct 338811 TTCCTTCACTCTCTGCTCGGAAGGTTTGTGGACCAGGTGTTTGAACATCAGGCAGGCAAA 338752 Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13727 ||||| || | ||||||||||| ||| ||||||| || ||||| | | || ||||| Sbjct 338751 GTCACAGTGTAAACCCTCATCTCTGCTAGTAAGTTCATTGGAAAAGGCGAGGCCAGGCAT 338692 Query 13728 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 13787 || || ||||| || | ||| ||||| | || || || || ||||||| ||||| || Sbjct 338691 CAGGCCACGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAGGATTCCTTC 338632 Query 13788 AACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTT 13847 || |||||||| || | | ||||| || | | | | ||||| |||| | Sbjct 338631 CACAGCAGCAAAAGCCACAACCCGTTCCCCGTAGGTACCCTCTTTGTCCCCAGTCCAATG 338572 Query 13848 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATG 13907 ||||| || | || || || | | || |||||| ||||| || ||||| | | Sbjct 338571 CAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCGATGGCGTTGAAGAGAAA 338512 Query 13908 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 13967 |||| | ||||| | | | ||| || || ||| | || | || ||||| ||||| || Sbjct 338511 TTCCCTTTCTTTGGAATCTTTAATATAAGTGTCAGTGAGGAGACTGTACATCTCAGAATG 338452 Query 13968 TATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14027 |||||||| || || | || || |||| ||||| | ||||||| || || || Sbjct 338451 GATGTTTTCCATGGCAAATTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 338392 Query 14028 CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGC 14087 | ||| | || ||||||||||||| || || |||||||| |||||||| || || Sbjct 338391 TTGGCTAAACCGCTCCACCAAGTTTTCATTTACGATGCCATCACTCGCTGCAAAGAAAGC 338332 Query 14088 CAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAA-- 14145 || | || ||||||||| ||| ||| || || || ||| | ||| || Sbjct 338331 CAGAACGTGGGATATAAAGTATCTCTCCTCAGGCTTCAGGGATTCCCAGT--GCTGAATG 338274 Query 14146 TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATAC 14202 ||||| |||||||| || | ||| |||||||||| ||| ||||||| |||||| Sbjct 338273 TCCTTGGAAAGATCCACCTTTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATAC 338217 >seq417 Length=2207251 Score = 159 bits (176), Expect = 3e-34 Identities = 462/707 (65%), Gaps = 8/707 (1%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370 || || ||| |||| || | |||| ||| || | || | | || || | ||||| | Sbjct 863620 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCATTCCCATCCT 863678 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| || | ||||| || |||| |||||||| || ||||||||||| ||||| || Sbjct 863679 CTGATACTCGCCTACTCTCTTCACAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 863738 Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490 |||| | || ||||||||| | || || || || ||||||| || | | | Sbjct 863739 CATATAGTCAAATGGATTTTCTACTCCGAAAACCTTGCCAAAACCTAGCTCCAGCATAAG 863798 Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550 || || || | ||||||||||| || |||||| |||||||| || || | || Sbjct 863799 TCGGTCTGCCACGAACTCAATATACTGCTTCATTAACATGCAATTCATCCCAATGAACTT 863858 Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 13610 | || | | | | ||| | | ||||| || || | | ||||| || Sbjct 863859 CATGGGCAAGGCCTCCTTGATGAATCCCTGCTCTATCTGAACGGCAT---TAATAATTAT 863915 Query 13611 ---CTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13667 ||| | | | ||||| | || ||||| || || | || ||||| Sbjct 863916 TTCCTTCACTCCCTGCTCGGAAGGTTTGTGGACCAGGTGTTTGAACATCAGGCAGGCAAA 863975 Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13727 ||||| || | ||||||||||| ||||||||||| || ||||| || | || ||||| Sbjct 863976 GTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCAT 864035 Query 13728 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 13787 || | ||||| || | ||| ||||| | | || || || |||||||| ||||| || Sbjct 864036 CAGGCTGCGTTTCTTGAGCCAGAATATCGACTCAAAAGAACCAGAAAAGAAGATTCCTTC 864095 Query 13788 AACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTT 13847 || |||||||| | | | ||||| || | | || | ||||| ||||| Sbjct 864096 CACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCCTCTTTGTCCCCGATCCAACG 864155 Query 13848 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATG 13907 ||||| | | | || || | | || |||||| || || || ||||| | | Sbjct 864156 CAAGGCCCAGGCTGCCTCCTTCTTTACACAAGGCATTGTCTCCATGGCGTTGAAGAGAAA 864215 Query 13908 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 13967 |||| | |||| | | | |||||| || ||||| || | |||||||| ||||| || Sbjct 864216 TTCCCTTTCTTCGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATCTCAGAATG 864275 Query 13968 TATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014 |||||||| || | || || || ||||| ||||| | ||||||| Sbjct 864276 AATGTTTTCCATGGTAATTTGGAAGCCATAGAAACAGCGGGCTTCTG 864322 >seq1832 Length=302895 Score = 123 bits (136), Expect = 2e-23 Identities = 547/861 (64%), Gaps = 15/861 (2%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || || || | ||||| |||| |||| || ||||| | |||||| || ||| Sbjct 206447 GACATCACTCCTATCCTCTGATACTCACCTCCTCTCTTCTCAAAGAGGTTAGTCTTCCCT 206506 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA 13473 |||||||| ||||| ||||||| || ||||||||| | | | || || | || Sbjct 206507 TCCAGTGAAATATTCTCCATAAGGTCAAATGGATTTTCTACTCTGGAAACCTTGCTAAAA 206566 Query 13474 CCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13533 |||||||| | || || || || || |||||||| || ||||| ||| Sbjct 206567 CCTAGTTCCTGCCTAAGTCAGTCTGCCATGAATTCAATATACTGCTTTATTAACATGCAA 206626 Query 13534 TTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACA 13593 ||||| || || || || | || | | | | || || | ||||| || Sbjct 206627 TTCATCCCAATGAGCTTCAGCGGCAAGGCCTCTGGGAGGAACTCCTGGTCTATCCTAACG 206686 Query 13594 GCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAA 13653 || | | | || || ||| | | | | ||||| || || ||||| || Sbjct 206687 GCTTTGATAATTATTTCCTTCACTCTCTGCTCTGAAGGTTTATGGACCAGGTGTTTGAAC 206746 Query 13654 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13713 || | | ||||| |||| || | ||||||||||| |||||||| || || ||||| Sbjct 206747 ATCAGGTAGGCAAAGTCACGGTGTAAACCCTCATCTCTGCTAATAAGCTCATTGGAAAAC 206806 Query 13714 -GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGA 13772 || | || ||||||| | | ||| || | ||| |||| || | || || | Sbjct 206807 AGTGAGGCCAGGCATCAGGCTGCATTTCTTGAGCCAGTATATCAACGCAGAAGAACCAAA 206866 Query 13773 AAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTT 13832 |||| | ||||| || |||||||| | | | | ||| || | | || | ||| Sbjct 206867 AAAGGAGATTCCTTCCGTGGCAGCAAAGTCCACAACCCATTCCCCGTAGGTAGCCTCTTT 206926 Query 13833 GTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGAT 13892 || | ||| | ||||| | | || || | | || |||||| || || Sbjct 206927 GTCCCCAACCCAATGCAAGGCCCAATTTGCCTTCTTCCTTCCACAAGGCATTGTCTCCAT 206986 Query 13893 TGCATTGAATAAATGTTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGC 13951 | ||||| | | |||| ||||||| | | ||| || || || ||| | || | | Sbjct 206987 GGTGTTGAAGAGAAATTCCCTCTCTTTGGAATCTT---ATATAAGTGTCAGTGAGGAGAC 207043 Query 13952 TATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTT 14011 || |||| ||||| || |||||||| || || || || || ||||| ||||| | |||| Sbjct 207044 TACACATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGGCTT 207103 Query 14012 CTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCAC 14071 ||| | || ||||| | | | | || ||||||||||||| || || ||| ||| Sbjct 207104 CTGTCATCTGAACCTCTTGGCCACACCACTCCACCAAGTTTTCATTTACTATGCCAACAC 207163 Query 14072 TAGCTGCAAAAAATGCCA------ATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGA 14125 | || |||| || |||| | || ||||| | | ||| ||| || | Sbjct 207164 TTGCCACAAAGAAAGCCAGAACGTGAACGTGGGGTATAAAATCTCTCTCCTCAGGCTTCA 207223 Query 14126 GTTTTTTCCAATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACT 14183 | || ||| | ||| || ||||| ||||||| || || | | ||||||||||| Sbjct 207224 GGGATTCCCAGT--GCTGAATGTCCTTGGAAAGATTCACCTCTTTAGCTGTCCAAAAAGA 207281 Query 14184 AGCGACAGCTTTTTTATACAT 14204 ||| ||||||| ||| |||| Sbjct 207282 AGCCTCAGCTTTCTTACACAT 207302 >seq148 Length=4816872 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || ||||| || | || ||||||| || ||||| | Sbjct 2362149 CCTCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGGCCGCGTTTCT 2362208 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || || |||||||| ||||| || || |||||||| | Sbjct 2362209 TGAGCCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 2362268 Query 13802 CTATTAGTCGTTCTCC 13817 | | | |||||||| Sbjct 2362269 CCACAACCCGTTCTCC 2362284 Score = 91.5 bits (100), Expect = 1e-13 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 2360427 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 2360485 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| || Sbjct 2360486 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 2360545 Query 13431 CATAAAATCGAATGGATTT 13449 |||||| || ||||||||| Sbjct 2360546 CATAAAGTCAAATGGATTT 2360564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478565510672520