Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq476 96.9 3e-15 seq75 86.0 5e-12 >seq476 Length=3007960 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||| ||||| ||||| | ||| | |||| ||||||||| | ||||| ||||| Sbjct 1868588 CCACCACCAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGGCGGAC 1868647 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATC 42995 || |||||||| || ||| ||| ||||||||||| |||| || ||||||||| Sbjct 1868648 AAAGTACGTTCATCTCCCAGTTGCTTGCCGGCAAAGATCAGTCCCTGTTGATC 1868700 >seq75 Length=4930459 Score = 86.0 bits (94), Expect = 5e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| ||||||||||| | ||| | |||| ||||||||| | ||||| || ||| Sbjct 2283651 CCACCACGAAGTCTTAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 2283710 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGAT 42994 || || ||| | || ||| ||| ||||| ||||| ||||| | ||| |||| Sbjct 2283711 AAAGTGCGTCCATCTCCCAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGAT 2283762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381351505561794