Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1020 338 8e-88 seq417 241 2e-58 seq1832 210 3e-49 seq148 129 8e-25 seq3 129 8e-25 seq158 120 4e-22 >seq1020 Length=850931 Score = 338 bits (374), Expect = 8e-88 Identities = 646/943 (69%), Gaps = 18/943 (2%) Strand=Plus/Minus Query 41714 TTTCT-TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCC 41769 ||||| ||| |||||| |||| || | |||| ||| ||| | || ||||| | ||| Sbjct 339111 TTTCTCTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCATTCC 339052 Query 41770 CATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATAT 41829 ||| | || ||||| || || | || || ||| |||||||| ||||||| ||| || Sbjct 339051 CATCCTCTGATATTCGCCTACTCTCTTCTC---AAAGTTAGTCTTCCCTTCCAGTGAAAT 338995 Query 41830 ATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGA 41889 ||| ||||| || ||||| ||||| || | ||| || ||| || | || Sbjct 338994 ATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCAAAACCTAGCTCCAG 338935 Query 41890 AATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT 41949 || | || ||||| | ||| || ||||| ||||| | | |||||||| || || Sbjct 338934 CATAAGTCGGTCTGCCACGAACTCAATATACTGCTTCATTAATGTGCAATTCATCCCAAT 338875 Query 41950 AAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTAT 42009 || || || || | ||| | || || || || || || || || || | | || Sbjct 338874 GAGCTTCACAGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCGAACGGCAT---TAAT 338818 Query 42010 AATAGAT--CTT-ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACA 42066 ||| | ||| ||| | | || ||| | | | ||||| ||||||| || Sbjct 338817 AATTATTTCCTTCACTCTCTGCTCGGAAGGTTTGTGGACCAGGTGTTTGAACATCAGGCA 338758 Query 42067 TGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 42126 || || || ||||| | |||||||||||| ||| | | ||| |||||||| | ||| || Sbjct 338757 GGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAGTAAGTTCATTGGAAAAGGCGAGGCC 338698 Query 42127 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGAT 42186 ||||| |||||||| || || ||||| ||||| || ||||| || |||||||||| ||| Sbjct 338697 AGGCATCAGGCCACGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAGGAT 338638 Query 42187 TCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTAT 42243 |||||| || || ||||| || | || | || || || ||| | |||| | Sbjct 338637 TCCTTCCACAGCAGCAAAAGCCACAACCCGTTCCCCGTAGGTACCCTCTTTGTCCCCAGT 338578 Query 42244 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 ||| | |||||||| |||||||| |||||||||||||| || || ||||| || || Sbjct 338577 CCAATGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCGATGGCGTTGAA 338518 Query 42304 GAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTC 42363 |||| | | |||| || |||||||| ||| || || | | ||||| ||||| || Sbjct 338517 GAGAAATTCCCTTTCTTTGGAATCTTTAATATAAGTGTCAGTGAGGAGACTGTACATCTC 338458 Query 42364 TGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTG 42423 ||||| |||||||| ||||| | || || | |||||||| | ||| || |||| ||| Sbjct 338457 AGAATGGATGTTTTCCATGGCAAATTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTG 338398 Query 42424 TACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAA 42483 |||||| | ||| || || | || ||||| || || || || ||||| |||||||| Sbjct 338397 AACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACGATGCCATCACTCGCTGCAAA 338338 Query 42484 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATT-CCAATCAT 42542 || |||| || || |||||| ||| | || || || || | ||| ||| | | Sbjct 338337 GAAAGCCAGAACGTGGGATATAAAGTATCTCTCCTCAGG-CTTCAGGGATTCCCAGTGCT 338279 Query 42543 TGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTAT 42602 || || || || | ||| || | ||| | |||||||| || || || || || |||| Sbjct 338278 GAATGTCCTTGGAAAGATCCACCTTTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTAT 338219 Query 42603 ACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 || | | ||| |||||| || | || ||||| || ||||| Sbjct 338218 ACCTCTGCCAAATATCACAGTACTCGATGGGGAAGATGACAAA 338176 >seq417 Length=2207251 Score = 241 bits (266), Expect = 2e-58 Identities = 284/384 (74%), Gaps = 3/384 (1%) Strand=Plus/Plus Query 42050 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCG 42109 ||||| ||||||| || || || || ||||| | |||||||||||| ||||| | ||| Sbjct 863953 TGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCA 864012 Query 42110 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAAT 42169 |||||||||||||| || ||||| |||| || || || ||||| ||||| ||| |||| Sbjct 864013 TTGGAAAACGTGAGGCCAGGCATCAGGCTGCGTTTCTTGAGCCAGAATATCGACTCAAAA 864072 Query 42170 GATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---A 42226 || |||||||||||||||||||| || || |||||| | | || | || || || | Sbjct 864073 GAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTA 864132 Query 42227 CCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 42286 | | |||| ||||| ||||| | |||| ||| |||||||||||||| Sbjct 864133 GCCTCTTTGTCCCCGATCCAACGCAAGGCCCAGGCTGCCTCCTTCTTTACACAAGGCATT 864192 Query 42287 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATC 42346 || || ||||| || |||||| | | |||| | |||||||| || || || || Sbjct 864193 GTCTCCATGGCGTTGAAGAGAAATTCCCTTTCTTCGGAATCTTTAATGTAAGTGTCAATG 864252 Query 42347 AAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 42406 | ||||||||||| || |||||||||||||| |||| || || || || |||||||| Sbjct 864253 AGGAGACTATACATCTCAGAATGAATGTTTTCCATGGTAATTTGGAAGCCATAGAAACAG 864312 Query 42407 CTGGCCTCGGTAACCTGTACTTCT 42430 | ||| || |||| ||| |||||| Sbjct 864313 CGGGCTTCTGTAATCTGAACTTCT 864336 >seq1832 Length=302895 Score = 210 bits (232), Expect = 3e-49 Identities = 594/901 (66%), Gaps = 20/901 (2%) Strand=Plus/Plus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||| ||||| || | || || ||||| | | || || || | |||||||| ||| Sbjct 206447 GACATCACTCCTATCCTCTGATACTCACCTCCTCTCTTCTCAAAGAGGTTAGTCTTCCCT 206506 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 41878 |||| ||| ||||| ||||| | ||||| ||||| || | ||| || |||| Sbjct 206507 TCCAGTGAAATATTCTCCATAAGGTCAAATGGATTTTCTACTCTGGAAACCTTGCTAAAA 206566 Query 41879 CCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATA-TGTTTTCATCATTTCACA 41937 || | ||| | | || ||||| |||||||| ||||| || ||| | | | || Sbjct 206567 CCTAGTTCCTGCCTAAGTCAGTCTGCCATGAATTCAATATACTGCTTTATTAACATG-CA 206625 Query 41938 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 41997 |||||| || || || || | || | ||| | | || || || || || || || Sbjct 206626 ATTCATCCCAATGAGCTTCAGCGGCAAGGCCTCTGGGAGGAACTCCTGGTCTATCCTAAC 206685 Query 41998 CGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTC--GGTGGATACAATAAATGTTTA 42055 || | || || | || || | | | ||| | || ||| || | | ||||| Sbjct 206686 GGCTT-TGATA-ATTATTTCCTTCACTCTCTGCTCTGAAGGTTTATGGACCAGGTGTTTG 206743 Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 ||||||| | || || || | ||| | |||||||||||| ||||| | || |||||| Sbjct 206744 AACATCAGGTAGGCAAAGTCACGGTGTAAACCCTCATCTCTGCTAATAAGCTCATTGGAA 206803 Query 42116 AAC-GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCC 42174 ||| ||||| || ||||| |||| | || || ||||| |||| ||||| | || || Sbjct 206804 AACAGTGAGGCCAGGCATCAGGCTGCATTTCTTGAGCCAGTATATCAACGCAGAAGAACC 206863 Query 42175 AGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGC 42231 | ||||| |||||||||| || |||||| | | || | || || || | | | Sbjct 206864 AAAAAAGGAGATTCCTTCCGTGGCAGCAAAGTCCACAACCCATTCCCCGTAGGTAGCCTC 206923 Query 42232 ACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 42291 |||| | ||| | ||||||| |||||||| || |||||||||| || || Sbjct 206924 TTTGTCCCCAACCCAATGCAAGGCCCAATTTGCCTTCTTCCTTCCACAAGGCATTGTCTC 206983 Query 42292 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAG 42351 |||| || |||||| | | | || || ||||| | ||| || || | | || Sbjct 206984 CATGGTGTTGAAGAGAAATTCCCTCTCTTTGGAATCTT--ATATAAGTGTCAGTGAGGAG 207041 Query 42352 ACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGC 42411 |||| |||| || ||||| |||||||| ||||| || || || || |||||||| | ||| Sbjct 207042 ACTACACATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGGC 207101 Query 42412 CTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTC 42471 || || | ||| || ||| | | | | || | || ||||| || ||||| || | Sbjct 207102 TTCTGTCATCTGAACCTCTTGGCCACACCACTCCACCAAGTTTTCATTTACTATGCCAAC 207161 Query 42472 ACTGGCTGCAAAAAACGCCA------ATACATGTTTTATAAAATATTTTTCGTCCGGTGT 42525 ||| || |||| || |||| || || |||||||| | | || || || | Sbjct 207162 ACTTGCCACAAAGAAAGCCAGAACGTGAACGTGGGGTATAAAATCTCTCTCCTCAGG-CT 207220 Query 42526 TAATTTATT-CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATG 42584 | | ||| ||| | | || || || || | || || |||| | |||||||| | Sbjct 207221 TCAGGGATTCCCAGTGCTGAATGTCCTTGGAAAGATTCACCTCTTTAGCTGTCCAAAAAG 207280 Query 42585 ATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAA 42644 | || || || || ||| |||| | ||| | ||||||||| | || ||||| || | || Sbjct 207281 AAGCCTCAGCTTTCTTACACATCTGCCAAAGATCATGATACTCCATAGGGAAGATGAGAA 207340 Query 42645 A 42645 | Sbjct 207341 A 207341 >seq148 Length=4816872 Score = 129 bits (142), Expect = 8e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| |||||||| ||||| || ||||| ||||| || || | Sbjct 2362149 CCTCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGGCCGCGTTTCT 2362208 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| |||||||| || |||||||||||||||||||| || || ||||| | Sbjct 2362209 TGAGCCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 2362268 Query 42207 C 42207 | Sbjct 2362269 C 2362269 >seq3 Length=9835568 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | Sbjct 152606 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 152665 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | || | Sbjct 152666 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 152725 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 152726 CTGTTTCTTATACCAT 152741 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| ||||||||||| || |||||| |||| |||| || || ||||| || | Sbjct 150104 TCCAGCCGTAGAAATGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCGATGTGGATGT 150163 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| || || |||||||| ||||| || || || || || ||||| || | | || | Sbjct 150164 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCTTAAGAACGGTTT 150223 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 | |||| ||||||||| | || ||||||| | |||| | || || |||| Sbjct 150224 TCTGTGAAATTTCCCACACGGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 150274 Score = 104 bits (114), Expect = 3e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440 |||| || || ||||| || | | | ||| || ||||| || || || || ||||||| Sbjct 157356 CATAGGTTTCATATGGGCCATGCTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 157415 Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500 ||||||||||||| || |||| |||||| || || ||||| || || ||||| |||| Sbjct 157416 AATAAATGGTTTCAAAGATCTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCAAAAGGAT 157475 Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560 | | | |||||||| || ||||| | ||||| || || || || || || | || | Sbjct 157476 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCGATTCCAATGGGGCGATGGC 157535 Query 71561 TCTTATTAGA 71570 ||||| || Sbjct 157536 GTTTATTTGA 157545 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||| |||||||| ||||||||||| || | || || || |||| | || Sbjct 162121 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGT 162180 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| || Sbjct 162181 TCTTCCTTTCCTGTGTTCTTCTTTAAATCCAGAAACTCAAAAATGTCTAAATGCCAAGGC 162240 Query 72142 TCCAAGTATATGGC 72155 |||| ||| || || Sbjct 162241 TCCAGGTAAATAGC 162254 >seq158 Length=7371824 Score = 120 bits (132), Expect = 4e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 |||||||| || || | ||| ||||||||||||||||||||||| || || | || || Sbjct 3463986 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCTTT 3463927 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCA 42208 ||||| ||||||| ||||| ||||| || ||||| ||||||||||| || ||||| || Sbjct 3463926 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAAGCC 3463867 Query 42209 ATAAGTCTCTCTCC 42222 | || ||| || || Sbjct 3463866 ACAACTCTTTCCCC 3463853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671106540688680