Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1020 158 2e-33 seq417 95.1 2e-14 >seq1020 Length=850931 Score = 158 bits (174), Expect = 2e-33 Identities = 575/882 (65%), Gaps = 35/882 (4%) Strand=Plus/Plus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 || |||||| ||| ||| |||||| | | ||| || || ||| |||| ||||||||| Sbjct 338185 TTCCCCATCGAGTACTGTGATATTTGGCAGAGGTATAAGAAAGCTGAGGCTTCCTTTTGG 338244 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || | ||| |||| ||||| ||||||||| | | | ||||| | | | |||| Sbjct 338245 ACAGCTGAAAAGGTGGATCTTTCCAAGGACATTCAGCACTGGGAATCCCTGAAGCCTGA- 338303 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 ||| || | |||||||| ||| || |||| |||||||| | ||||| ||||| Sbjct 338304 --GGAGAGATACTTTATATCCCACGTTCTGGCTTTCTTTGCAGCGAGTGATGGCATCGTA 338361 Query 125178 AACGACAATCTGTTGACACGATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCGTGCTT 125236 || || || || || || || |||| |||| | ||| |||| | || || Sbjct 338362 AATGAAAACTTGGTGGAGCGGTTTAGCCAAGAAGTTCA-GATTACAGAAGCCCGCTGTTT 338420 Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 || | |||||| | || || ||| | || || || |||||| | || | ||| Sbjct 338421 CTATGACTTCCAATTTGCCATGGAAAACATCCATTCTGAGATGTACAGTCTCCTCACTGA 338480 Query 125297 CATGTACATTCGCGATCCGCAACGTAA-ACACATGCTCTTTAACGCAATCGACACGGTGC 125355 || || ||| ||| | ||| | || | | ||||| ||||| ||||| || ||| Sbjct 338481 CACTTATATTAAAGATTC-CAAAGAAAGGGAATTTCTCTTCAACGCCATCGAGACAATGC 338539 Query 125356 CGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGT 125415 | | | || || ||||| | |||| | | |||| | ||| | || | | | Sbjct 338540 CTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGCATTGGACTGGGGACAAAGAGGGTACCT 338599 Query 125416 ACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTG 125475 ||| || | | ||||| || || || || || || ||| ||||||| ||| ||||| Sbjct 338600 ACGGGGAACGGGTTGTGGCTTTTGCTGCTGTGGAAGGAATCCTCTTTTCTGGTTCTTTTG 338659 Query 125476 CGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT--AACGA 125533 | | || || ||||||||||| || || || ||||| || || ||| | || || Sbjct 338660 CATCGATATTCTGGCTCAAGAAACGTGGCCTGATGCCTGGCCT--CGCCTTTTCCAATGA 338717 Query 125534 GTTTA-TATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACT 125592 ||| || | |||| ||||| ||||||||||||||||| || |||| ||| Sbjct 338718 ACTTACTAGC-AGAGATGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTT---CAAAC 338773 Query 125593 ATCTGCGTCCCGA---GTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATG 125649 | ||| |||| | | | || ||| || | |||| || | ||| ||| Sbjct 338774 ACCTG-GTCCACAAACCTTCCGA-GCAGAGA-GTGAAGGAAATAATTATT------AATG 338824 Query 125650 CCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGA 125709 |||| ||||||| || ||||| || || || || | || || | | ||||| |||| Sbjct 338825 CCGTTCGGATAGAGCAGGAGTTCCTCACGGAGGCCTTGCCTGTGAAGCTCATTGGGATGA 338884 Query 125710 ACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTT-- 125767 | |||| ||||| |||| || ||||| |||||||| || || || ||| | Sbjct 338885 ATTGCACATTAATGAAGCAGTATATTGAGTTCGTGGCAGACCGACTTATGCTGGAGCTAG 338944 Query 125768 GATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACT 125827 | || | ||||| ||| || | | ||||| ||||| || ||| | || ||||| Sbjct 338945 GTTTTG--GCAAGGTTTTCAGAGTAGAAAATCCATTTGACTTTATGGAGAATATTTCACT 339002 Query 125828 AGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 || || ||||| |||||| ||||||| || |||| || Sbjct 339003 GGAAGGGAAGACTAACTTT---GAGAAGAGAGTAGGCGAATA 339041 >seq417 Length=2207251 Score = 95.1 bits (104), Expect = 2e-14 Identities = 411/643 (64%), Gaps = 19/643 (3%) Strand=Plus/Minus Query 125232 TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 || || || || |||||||| | || || ||| | || || || ||||| | || Sbjct 864311 TGTTTCTATGGCTTCCAAATTACCATGGAAAACATTCATTCTGAGATGTATAGTCTCCTC 864252 Query 125292 ATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACG 125351 ||||||| |||||| ||| | || | | | ||||| ||||| || || || Sbjct 864251 ATTGACACTTACATTAAAGATTCCGAAGAAAGGGAATTTCTCTTCAACGCCATGGAGACA 864192 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCT 125411 |||| | | || || |||| |||| | || ||||||| ||| | || || Sbjct 864191 ATGCCTTGTGTAAAGAAGGAGGCAGCCTGGGCCTTGCGTTGGATCGGGGACAAAGAGGCT 864132 Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGT 125471 | |||| || | | |||| || || || || || || ||||||||||| ||| | Sbjct 864131 ACCTACGGGGAACGGGTTGTGGACTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTCT 864072 Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531 |||| | | || || ||||||||||| ||| | || ||||| || || ||| || Sbjct 864071 TTTGAGTCGATATTCTGGCTCAAGAAACGCAGCCTGATGCCTGGCCTCACGTTTTCCAAT 864012 Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAAC 125591 || |||| |||| ||||| ||||||||||||||||| || |||| ||| Sbjct 864011 GAACTTATTAGCAGAGATGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTT---CAAA 863955 Query 125592 TATCTGCGTCCCGA---GTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGAT 125648 | ||| |||| | | | || ||| || | |||| || | ||| || Sbjct 863954 CACCTG-GTCCACAAACCTTCCGA-GCAGGGA-GTGAAGGAAATAATTATT------AAT 863904 Query 125649 GCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATG 125708 ||||| |||||| || | || | | || || | || | | | ||||| ||| Sbjct 863903 GCCGTTCAGATAGAGCAGGGATTCATCAAGGAGGCCTTGCCCATGAAGTTCATTGGGATG 863844 Query 125709 AACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTT- 125767 || |||| | ||||| |||| || ||||| |||||||| || || || ||| | Sbjct 863843 AATTGCATGTTAATGAAGCAGTATATTGAGTTCGTGGCAGACCGACTTATGCTGGAGCTA 863784 Query 125768 -GATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCAC 125826 | || | ||||| ||| | | | ||||| ||||| | ||| | || |||| Sbjct 863783 GGTTTTG--GCAAGGTTTTCGGAGTAGAAAATCCATTTGACTATATGGAGAATATTTCAC 863726 Query 125827 TAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 | || || ||||| ||||| || | ||||| || ||||||| Sbjct 863725 TGGAAGGGAAGACTAACTTCTTTGTGAAGAGAGTAGGCGAGTA 863683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741023138206680