Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013
-01-16] 3,893 sequences; 2,400,150,193 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq395 104 2e-17
seq29 100 2e-16
seq33 89.7 4e-13
seq59 87.8 1e-12
seq174 86.0 5e-12
seq75 82.4 6e-11
>seq395
Length=2662522
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| | | ||| || || | |||||| ||||| || ||||| |||||||| ||
Sbjct 955164 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 955223
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | | | | ||||| | ||| ||||||| | |||| | || || || |||
Sbjct 955224 AAAGTGCGTCCATCTTCCAGTTGCTTGCCAGGCAAGATCAGTCTCTGCTGATCAGGAGGA 955283
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
||||||||||| | | ||| ||| ||||||| ||||||| ||||| | ||| ||
Sbjct 955284 ATTCCTTCTTTATTATGAATCTTGGCCTTTACATTTTCTATTGTATCCGAAGGTTCAACC 955343
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
|| | |||||||| || || || || ||||| || ||||| ||||| ||
Sbjct 955344 TCGAGAGTAATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 955393
>seq29
Length=5782310
Score = 100 bits (110), Expect = 2e-16
Identities = 157/222 (71%), Gaps = 6/222 (3%)
Strand=Plus/Minus
Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAAT---TCT 15204
||| || || | |||||| ||||| || ||||| |||||||| || | ||| | |
Sbjct 156626 TCTCAACACAAGATGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAG--ACAATGTGTGT 156569
Query 15205 CGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTC 15264
| | ||||| ||||| |||||||| | |||| | || || || |||||||||||
Sbjct 156568 C-CATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTC 156510
Query 15265 TTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGT 15324
|| | ||| ||| ||||||| ||||||| ||||| |||| || || | ||
Sbjct 156509 CTTATTCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGTTTCAACCTCGAGAGT 156450
Query 15325 AATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
||||| || ||||| || ||||| || ||||| ||||| ||
Sbjct 156449 GATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATCTT 156408
>seq33
Length=6086033
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| | | ||| || || | |||||| ||||| || ||||| |||||||| ||
Sbjct 2214769 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 2214828
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | | | | ||||| | ||| |||||||| |||||| | || || || |||
Sbjct 2214829 AAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAATATCAGTCTCTGCTGATCAGGAGGA 2214888
Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
|||||||| || || ||| ||||| ||||||| |||| || ||| | ||| ||
Sbjct 2214889 ATTCCTTCCTTATCCTGAATCTTTGC-CTTTACATTTTCCATTGTACCCGAGGGTTCAAC 2214947
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| | || ||||| || || || || ||||| || ||||| |||||
Sbjct 2214948 CTCGAGAGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 2214995
>seq59
Length=2579055
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207
||| || || | |||||| ||||| || ||||| |||||||| || | | | | |
Sbjct 1130463 TCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCC 1130522
Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267
||||| | ||| |||||||| | |||| | || || || ||||||||||| ||
Sbjct 1130523 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTT 1130582
Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327
|| ||| ||| ||||||| ||||||| ||||| ||| || | | || ||
Sbjct 1130583 ATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGCGTTCAACCGCGAGAGTGAT 1130642
Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
||| || || || || ||||| || ||||| |||||
Sbjct 1130643 GGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 1130678
>seq174
Length=4297676
Score = 86.0 bits (94), Expect = 5e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| | | ||| || || | |||||| ||||| || ||||| ||| |||| || |
Sbjct 3533524 CCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCACAC 3533465
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | || |||||| | ||| ||||||||| | |||| | || || || |||
Sbjct 3533464 AAAGTTTGTCTGTCTTCCAGTTGCTTGCCAGCGAAGATCAGTCTCTGCTGATCAGGAGGA 3533405
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|||||||| || || || ||| ||||||| |||||| ||||| ||| |
Sbjct 3533404 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTACTGTATCTGAGGATTCAATC 3533345
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
|| | || ||||| || || | || ||||| |||||||| ||||| ||
Sbjct 3533344 TCGAGAGTGATGGTCTTCCCCATAAGGGTTTTCACAAAAATCTGCATCTT 3533295
>seq75
Length=4930459
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| | | |||||| || | |||||| ||||| || ||||| |||||||| ||
Sbjct 2283651 CCACCACGAAGTCTTAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 2283710
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | | | | ||| | | ||| |||||||| | ||||| | || || | |||
Sbjct 2283711 AAAGTGCGTCCATCTCCCAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGATGAGGAGGA 2283770
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|||||||| || || ||| ||| ||||||| |||||| ||||| ||| |
Sbjct 2283771 ATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTAGTGTATCCGAGGGTTCAGCC 2283830
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
| | || ||||| || || || || ||||| || ||||| ||||| ||
Sbjct 2283831 TTGAGAGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 2283880
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362162016068313
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |