Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq395 104 2e-17 seq29 100 2e-16 seq33 89.7 4e-13 seq59 87.8 1e-12 seq174 86.0 5e-12 seq75 82.4 6e-11 >seq395 Length=2662522 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || || | |||||| ||||| || ||||| |||||||| || Sbjct 955164 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 955223 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| | ||| ||||||| | |||| | || || || ||| Sbjct 955224 AAAGTGCGTCCATCTTCCAGTTGCTTGCCAGGCAAGATCAGTCTCTGCTGATCAGGAGGA 955283 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||||||||| | | ||| ||| ||||||| ||||||| ||||| | ||| || Sbjct 955284 ATTCCTTCTTTATTATGAATCTTGGCCTTTACATTTTCTATTGTATCCGAAGGTTCAACC 955343 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | |||||||| || || || || ||||| || ||||| ||||| || Sbjct 955344 TCGAGAGTAATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 955393 >seq29 Length=5782310 Score = 100 bits (110), Expect = 2e-16 Identities = 157/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAAT---TCT 15204 ||| || || | |||||| ||||| || ||||| |||||||| || | ||| | | Sbjct 156626 TCTCAACACAAGATGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAG--ACAATGTGTGT 156569 Query 15205 CGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTC 15264 | | ||||| ||||| |||||||| | |||| | || || || ||||||||||| Sbjct 156568 C-CATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTC 156510 Query 15265 TTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGT 15324 || | ||| ||| ||||||| ||||||| ||||| |||| || || | || Sbjct 156509 CTTATTCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGTTTCAACCTCGAGAGT 156450 Query 15325 AATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 ||||| || ||||| || ||||| || ||||| ||||| || Sbjct 156449 GATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATCTT 156408 >seq33 Length=6086033 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || || | |||||| ||||| || ||||| |||||||| || Sbjct 2214769 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 2214828 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| | ||| |||||||| |||||| | || || || ||| Sbjct 2214829 AAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAATATCAGTCTCTGCTGATCAGGAGGA 2214888 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| || || ||| ||||| ||||||| |||| || ||| | ||| || Sbjct 2214889 ATTCCTTCCTTATCCTGAATCTTTGC-CTTTACATTTTCCATTGTACCCGAGGGTTCAAC 2214947 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || ||||| || || || || ||||| || ||||| ||||| Sbjct 2214948 CTCGAGAGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 2214995 >seq59 Length=2579055 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 ||| || || | |||||| ||||| || ||||| |||||||| || | | | | | Sbjct 1130463 TCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCC 1130522 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 ||||| | ||| |||||||| | |||| | || || || ||||||||||| || Sbjct 1130523 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTT 1130582 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || ||| ||| ||||||| ||||||| ||||| ||| || | | || || Sbjct 1130583 ATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGCGTTCAACCGCGAGAGTGAT 1130642 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || || || ||||| || ||||| ||||| Sbjct 1130643 GGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 1130678 >seq174 Length=4297676 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || || | |||||| ||||| || ||||| ||| |||| || | Sbjct 3533524 CCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCACAC 3533465 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | || |||||| | ||| ||||||||| | |||| | || || || ||| Sbjct 3533464 AAAGTTTGTCTGTCTTCCAGTTGCTTGCCAGCGAAGATCAGTCTCTGCTGATCAGGAGGA 3533405 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || || ||| ||||||| |||||| ||||| ||| | Sbjct 3533404 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTACTGTATCTGAGGATTCAATC 3533345 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || ||||| || || | || ||||| |||||||| ||||| || Sbjct 3533344 TCGAGAGTGATGGTCTTCCCCATAAGGGTTTTCACAAAAATCTGCATCTT 3533295 >seq75 Length=4930459 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | |||||| || | |||||| ||||| || ||||| |||||||| || Sbjct 2283651 CCACCACGAAGTCTTAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 2283710 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||| | | ||| |||||||| | ||||| | || || | ||| Sbjct 2283711 AAAGTGCGTCCATCTCCCAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGATGAGGAGGA 2283770 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || ||| ||| ||||||| |||||| ||||| ||| | Sbjct 2283771 ATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTAGTGTATCCGAGGGTTCAGCC 2283830 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 | | || ||||| || || || || ||||| || ||||| ||||| || Sbjct 2283831 TTGAGAGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 2283880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362162016068313