Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013
-01-16] 3,893 sequences; 2,400,150,193 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq29 89.7 3e-13
seq1198 84.2 1e-11
>seq29
Length=5782310
Score = 89.7 bits (98), Expect = 3e-13
Identities = 152/219 (69%), Gaps = 6/219 (3%)
Strand=Plus/Minus
Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216
|||||| | ||| | || || || ||||| || ||||| |||||||| || || ||
Sbjct 156623 CAACACAAGATGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGACAATGTGTGTCCATC 156564
Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276
||||||||||| ||| ||| || | | ||||| || | || || ||||| || |
Sbjct 156563 TTCCAATTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATT 156504
Query 33277 GCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333
|||| ||| ||||| ||| || || || || || ||| || ||||| ||
Sbjct 156503 CTGAATCTTGGCC---TTTACATTTTCTATTGTATCCGAGGTTTCAACCTCGAGAGTGAT 156447
Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372
|| || || ||||| ||||| |||||||| ||||| ||
Sbjct 156446 GGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATCTT 156408
>seq1198
Length=804178
Score = 84.2 bits (92), Expect = 1e-11
Identities = 140/201 (70%), Gaps = 6/201 (3%)
Strand=Plus/Minus
Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232
|| |||||||| || |||||||||||||| | | || | || |||| ||||| |||
Sbjct 573909 GTTGACTCTTTCTGGATATTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCA 573850
Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTCGCTAATCGCCTGT 33289
||| || | | |||||||| | ||| ||||| ||||| || | | |||||
Sbjct 573849 GCAAAGATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTCGCC--- 573793
Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349
|| || ||| | | ||||| |||| | || ||||| || || || || || || ||
Sbjct 573792 TTCACGTTTTCAGTGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTTAGG 573733
Query 33350 GTTTTTACGAAAATTTGCATG 33370
|| || ||||| || ||||||
Sbjct 573732 GTCTTCACGAAGATCTGCATG 573712
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318762475297914
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |