Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq2231 125 6e-24 seq2141 98.7 9e-16 >seq2231 Length=228578 Score = 125 bits (138), Expect = 6e-24 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 127171 GGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATGCCACAGGCA 127230 || |||||||| |||| |||||||| ||||||||||| || ||||| ||||| ||||| Sbjct 44939 GGTTGCCAAGCCTTGTCGGAGATGATCCAGTTCTACCTAGAGGAGGTGATGCCCCAGGCT 44998 Query 127231 GAAAATCACGGACCCGACATAAAAGAACACGTCAATTCCCTGGGTGAAAAGCTGAAGACA 127290 || || |||| || ||||| || || ||||| || |||||||| |||||||||||||| Sbjct 44999 GAGAACCACGACCCAGACATCAAGGAGCACGTGAACTCCCTGGGGGAAAAGCTGAAGACC 45058 Query 127291 TTGAGACTTCGACTGCGTCGCTGC 127314 | || || | ||||| || ||| Sbjct 45059 CTCAGGCTGAGGCTGCGGCGTTGC 45082 Score = 89.7 bits (98), Expect = 4e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 127379 AGCTTCAGGAAAGAGGCGTGTACAAGGCCATGAGTGAGTTTGACATATTCATCAACTACA 127438 |||| || || ||||| || ||||| |||||||||||||||||||| ||||||||||||| Sbjct 47248 AGCTCCAAGAGAGAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 47307 Query 127439 TCGAGACTTACATG 127452 | || || |||||| Sbjct 47308 TAGAAACCTACATG 47321 >seq2141 Length=56954 Score = 98.7 bits (108), Expect = 9e-16 Identities = 226/338 (67%), Gaps = 7/338 (2%) Strand=Plus/Plus Query 5582 CGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCG 5641 || || || || ||||| || || || |||||| | || || | || | | | ||| Sbjct 38696 CGTTCACAAATGAGCTGTGCAATCCGATCGCCCTTTTTGACTTGAAACTTCTCTTTGCCA 38755 Query 5642 AAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCC 5701 || || || || || || ||||| || || | |||||| | ||||| ||||| || || Sbjct 38756 AAATTAAATAGTACGACACCCACATTTCCTCTGTAGTCTTCATCTATGACGCCAGCTCCT 38815 Query 5702 ACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAG---CCACGCGGCCGTAGCAC 5758 | ||||||||||| || | |||| ||| || ||||||| | || | || |||||| Sbjct 38816 ATATCGATGAAGTGTTTTGCAGCCAAGCCAGAACGGGGAGCTACTACTCTTCCATAGCAC 38875 Query 5759 CCATCGGGAAGCTGTATCTGCAGGTCCGTGAACACCACTCGCCGACCGCC--CGCAGGGA 5816 ||| ||||| || ||| | |||||| ||| | | | | || | || | Sbjct 38876 CCAGAAGGAAGAGCTACCTGAATGTCCGTTTTCACAA--GGGCTTTCTCCATAGGTGGTA 38933 Query 5817 CGATGCAGTCGCAAGCGCTGCAGAGGTCGTACCCGGCCGCCCGCGGGGACCCCCTGGTGG 5876 | | || | || ||| | |||||||| || || ||||||| ||||||| |||| | Sbjct 38934 GTGTATAATCATAGGCACTGTACAGGTCGTAGCCTGCAGCCCGCGCGGACCCCTTGGTCG 38993 Query 5877 GGAGCGTGGCGTTGGGGGACAGGCGGACCACGCGGAGC 5914 || ||||||| || || ||||| | ||||||| Sbjct 38994 GGGCGGTGGCGTGCTCTGAGAGCCGGACAAAGCGGAGC 39031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430033995665816