Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq530 95.1 1e-14 seq47 93.3 4e-14 seq174 91.5 1e-13 seq75 89.7 4e-13 seq33 86.0 5e-12 seq59 84.2 2e-11 seq29 82.4 6e-11 >seq530 Length=2118653 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| || | || ||||| | |||||| ||| |||||||||||||||||| |||| Sbjct 63785 ACCTCCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 63844 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | || ||||| ||||| || | | || | | ||||||||| | Sbjct 63845 CAAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGA 63904 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| ||| ||| || ||| | | |||| ||||| | | || Sbjct 63905 AATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAAC 63964 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||||| || ||||| || || || || |||||||| |||||||||||| || Sbjct 63965 CTCGAGAGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCCTG 64016 >seq47 Length=4803410 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| |||| || ||| |||||||||||||| Sbjct 4289889 TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCCTCCAGCTGC 4289948 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| | | || || | |||||| || || | | || |||||| || ||| Sbjct 4289949 TTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGGATCTTC 4290008 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | | ||||| || | | |||| ||| | || ||||| |||||||| Sbjct 4290009 GCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTC 4290068 Query 48704 AGAGTTTTCACAAAAATCTGCATCGT 48729 | || |||||||| |||||||| || Sbjct 4290069 AAGGTCTTCACAAAGATCTGCATTGT 4290094 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| |||| || ||| |||||||||||||| Sbjct 4289661 TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCCTCCAGCTGC 4289720 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| | | || || | |||||| || || | | ||||||||| || ||| Sbjct 4289721 TTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTC 4289780 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | | ||||| || | | |||| ||| | || ||||| || ||||| Sbjct 4289781 GCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 4289840 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 | || ||||| || |||||||| Sbjct 4289841 AAGGTCTTCACGAAGATCTGCAT 4289863 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| |||| || ||| ||||||||||||| Sbjct 4289433 TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCCTCCAGCTGT 4289492 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| | | || || | |||||| || || | | ||||||||| || ||| Sbjct 4289493 TTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTC 4289552 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | | ||||| || | | |||| ||| | || ||||| || ||||| Sbjct 4289553 GCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCGGTC 4289612 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 | || ||||| || |||||||| Sbjct 4289613 AAGGTCTTCACGAAGATCTGCAT 4289635 >seq174 Length=4297676 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/222 (69%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 48512 CTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAA---TTGTCGC 48568 || ||||| | |||||| ||| ||||||||||||| |||| ||| ||| ||||| Sbjct 3533512 CTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCACACAAAGTTTGTCT- 3533454 Query 48569 TCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCC 48628 ||| ||||| ||||| || || | || | | ||||||||| || | | |||| Sbjct 3533453 --GTCTTCCAGTTGCTTGCCAGCGAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCC 3533396 Query 48629 TTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTT 48688 || ||| || || ||| | | ||| ||||| | || || |||||| || Sbjct 3533395 TTATCCTGGATCTTGGCCTTTACATTTTCTACTGTATCTGAGGATTCAATCTCGAGAGTG 3533336 Query 48689 ATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||||| || || | || ||||||||||||||||||||| || Sbjct 3533335 ATGGTCTTCCCCATAAGGGTTTTCACAAAAATCTGCATCTTG 3533294 >seq75 Length=4930459 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | |||||||| | |||||| ||| |||||||||||||||||| |||| Sbjct 2283650 ACCACCACGAAGTCTTAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 2283709 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | || |||| ||||| || | | || || | |||||||| || Sbjct 2283710 CAAAGTGCGTCCATCTCCCAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGATGAGGAGG 2283769 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| ||| ||| || ||| | | ||| ||||| | | || | Sbjct 2283770 AATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTAGTGTATCCGAGGGTTCAGC 2283829 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 || || || ||||| || || || || |||||||| |||||||||||| || Sbjct 2283830 CTTGAGAGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTTG 2283881 >seq33 Length=6086033 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | || ||||| | |||||| ||| |||||||||||||||||| |||| Sbjct 2214768 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 2214827 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | || ||||| ||||| || | | || | | ||||||||| || Sbjct 2214828 CAAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAATATCAGTCTCTGCTGATCAGGAGG 2214887 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| ||| ||| || ||| | | | || ||| | | | || Sbjct 2214888 AATTCCTTCCTTATCCTGAATCTTTGCCTTTACATTTTCCATTGTACCCGAGGGTTCAAC 2214947 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||||| || ||||| || || || || |||||||| |||||||||||| || Sbjct 2214948 CTCGAGAGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCCTG 2214999 >seq59 Length=2579055 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 48512 CTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG 48571 || ||||| | |||||| ||| |||||||||||||||||| |||| ||| || | Sbjct 1130464 CTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCA 1130523 Query 48572 TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTG 48631 || ||||| ||||| || | | || | | ||||||||| || | | |||||| Sbjct 1130524 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTA 1130583 Query 48632 TCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATG 48691 ||| ||| || ||| | | |||| ||||| | || | ||| || ||| Sbjct 1130584 TCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGCGTTCAACCGCGAGAGTGATG 1130643 Query 48692 GTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 || || || || || |||||||| |||||||||||| || Sbjct 1130644 GTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCCTG 1130682 >seq29 Length=5782310 Score = 82.4 bits (90), Expect = 6e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 48512 CTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAAT-TGTCGCTC 48570 || ||||| | |||||| ||| ||||||||||||||||| |||| |||| ||| | | Sbjct 156625 CTCAACACAAGATGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGACAATGTGT-GTCC 156567 Query 48571 GTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTT 48630 || |||| ||||| || | | || | | ||||||||| || | | |||||| Sbjct 156566 ATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTT 156507 Query 48631 GTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTAT 48690 | | ||| || ||| | | |||| ||||| | | || ||||| || || Sbjct 156506 ATTCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGTTTCAACCTCGAGAGTGAT 156447 Query 48691 GGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| || || || || |||||||| |||||||||||| Sbjct 156446 GGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATC 156410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421231213341893