Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1020 185 9e-42 seq417 147 2e-30 seq158 89.7 5e-13 seq148 87.8 2e-12 >seq1020 Length=850931 Score = 185 bits (204), Expect = 9e-42 Identities = 591/912 (65%), Gaps = 13/912 (1%) Strand=Plus/Minus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 ||| || |||||||| || | ||| ||| ||| | ||||||| |||||||| | Sbjct 339105 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCATTCCCATCCT 339046 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 ||||| || | ||||| || || ||| || ||||| ||||||| ||| ||| || Sbjct 339045 CTGATATTCGCCTACTCTCTTCTC---AAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 338989 Query 21247 CATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAA 21306 |||||| |||||||||||||| | | || | || | |||| || || | |||| Sbjct 338988 CATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCAAAACCTAGCTC-CAGCATAA 338930 Query 21307 -TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATT 21365 || ||||| || || || ||||| || ||||||| |||||||| || || | | Sbjct 338929 GTCGGTCTGCCACGAACTCAATATACTGCTTCATTAATGTGCAATTCATCCCAATGAGCT 338870 Query 21366 TTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATAT 21425 | ||||| | || | || | || | ||||| ||||| | || ||| ||| Sbjct 338869 TCACAGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCGAACGGCATTAATAAT--TAT 338812 Query 21426 TTATTATCCTAGATGTAC--TAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAA 21483 || | || || | ||| | | | ||||| ||||||| || ||||| Sbjct 338811 TTCCTTCACTCTCTGCTCGGAAGGTTTGTGGACCAGGTGTTTGAACATCAGGCAGGCAAA 338752 Query 21484 ATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCAT 21543 ||||| || ||||| ||||| || || | | |||||| ||||| | | || ||||| Sbjct 338751 GTCACAGTGTAAACCCTCATCTCTGCTAGTAAGTTCATTGGAAAAGGCGAGGCCAGGCAT 338692 Query 21544 TAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTC 21603 | || | || || | ||| ||||| || ||||| | || ||||||| || || || Sbjct 338691 CAGGCCACGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAGGATTCCTTC 338632 Query 21604 AACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTT 21663 || |||||||| || || | ||||| ||||| ||| ||||| ||| |||| | Sbjct 338631 CACAGCAGCAAAAGCCACAACCCGTTCCCCGTAGGTACCCTCTTTGTCCCCAGTCCAATG 338572 Query 21664 TTCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGAT 21722 ||||| | |||||| |||||| | |||| ||||| || || || || || ||| Sbjct 338571 CAAGGCCCAATCTGCCTTCTTCTTT-ACACAAGGCATTGTCTCGATGGCGTTGAAGAGAA 338513 Query 21723 GAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAAT 21782 | |||| | ||| | || ||| ||||| ||||||| Sbjct 338512 ATTCCCTTTCTTTGGAATCTTTAATATAAGTGTCAGTGAGGAGACTGTACATCTCAGAAT 338453 Query 21783 GTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCT 21842 | || ||||| || || | || || | || ||||| | || |||| | ||||| | Sbjct 338452 GGATGTTTTCCATGGCAAATTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTT 338393 Query 21843 CGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATG 21902 | ||| || | |||||||||||||||| || |||||||| || ||||| || | Sbjct 338392 CTTGGCTAAACCGCTCCACCAAGTTTTCATTTACGATGCCATCACTCGCTGCAAAGAAAG 338333 Query 21903 CCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAAT-CTAATAAA 21961 ||| | | |||||| |||| || | | | | || ||| | || | | Sbjct 338332 CCAGAACGTGGGATATAAAGTATCTCTCCTCAGGCTTCAGGGATTCCCAGTGCTGA-ATG 338274 Query 21962 TCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATACATA 22021 || || || | ||| || | ||||| |||||||||| ||| ||| || |||||| | Sbjct 338273 TCCTTGGAAAGATCCACCTTTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACCTC 338214 Query 22022 ATCCAGATATCA 22033 ||| |||||| Sbjct 338213 TGCCAAATATCA 338202 >seq417 Length=2207251 Score = 147 bits (162), Expect = 2e-30 Identities = 467/721 (65%), Gaps = 8/721 (1%) Strand=Plus/Plus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 ||| || |||||||| || | ||| ||| ||| | ||||||| |||||||| | Sbjct 863619 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCATTCCCATCCT 863678 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 ||||| || | ||||| || | || || || ||||| ||||||| ||| ||| || Sbjct 863679 CTGATACTCGCCTACTCTCTTCACAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 863738 Query 21247 CATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAA 21306 |||| | |||||||||||||| | || | || | |||| || || | |||| Sbjct 863739 CATATAGTCAAATGGATTTTCTACTCCGAAAACCTTGCCAAAACCTAGCTC-CAGCATAA 863797 Query 21307 -TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATT 21365 || ||||| || || || ||||| || |||||| |||||||| || || || | Sbjct 863798 GTCGGTCTGCCACGAACTCAATATACTGCTTCATTAACATGCAATTCATCCCAATGAACT 863857 Query 21366 TTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATAT 21425 | | || | || | | | || | ||||| ||||| | || |||||| | Sbjct 863858 TCATGGGCAAGGCCTCCTTGATGAATCCCTGCTCTATCTGAACGGCATTAATAATTATTT 863917 Query 21426 TTATTA-TCCTAGAT-GTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAA 21483 | | ||| | | | | ||| | | | ||||| ||||||| || ||||| Sbjct 863918 CCTTCACTCCCTGCTCGGA--AGGTTTGTGGACCAGGTGTTTGAACATCAGGCAGGCAAA 863975 Query 21484 ATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCAT 21543 ||||| || ||||| ||||| || || || | |||||| ||||| || | || ||||| Sbjct 863976 GTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCAT 864035 Query 21544 TAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTC 21603 | | | || || | ||| ||||| ||| |||| | || |||||||| || || || Sbjct 864036 CAGGCTGCGTTTCTTGAGCCAGAATATCGACTCAAAAGAACCAGAAAAGAAGATTCCTTC 864095 Query 21604 AACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTT 21663 || |||||||| | || | ||||| ||||| |||| ||||| ||| ||||| Sbjct 864096 CACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCCTCTTTGTCCCCGATCCAACG 864155 Query 21664 TTCTGCCCATTTTGCCT-TTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGAT 21722 ||||| ||||| |||||| | |||| ||||| || || || || || ||| Sbjct 864156 CAAGGCCCAGGCTGCCTCCTTCTTT-ACACAAGGCATTGTCTCCATGGCGTTGAAGAGAA 864214 Query 21723 GAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAAT 21782 | |||| || ||| | ||| ||||||||| ||||||| Sbjct 864215 ATTCCCTTTCTTCGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATCTCAGAAT 864274 Query 21783 GTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCT 21842 | || ||||| || | || || || || || ||||| | || |||| | ||||| | Sbjct 864275 GAATGTTTTCCATGGTAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTT 864334 Query 21843 C 21843 | Sbjct 864335 C 864335 >seq158 Length=7371824 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| ||||| || | ||| ||||||||| ||| || ||| | | | | Sbjct 3477073 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCTGTAGTTTCTGCCATGACTGCAAAAC 3477014 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 |||||| || ||||| ||| || || |||||||| || ||||| || || || | Sbjct 3477013 GTTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTCT 3476954 Query 21246 CCATAAAATCAAATGGATTTTC 21267 ||||||||||||| |||||||| Sbjct 3476953 CCATAAAATCAAAGGGATTTTC 3476932 >seq148 Length=4816872 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 ||| || |||||||| || | ||| ||| ||| | ||||||| | |||||| | Sbjct 2360426 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCCATCCT 2360485 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 ||||| || | ||||| || || || || || ||||| ||||||| ||| ||| || Sbjct 2360486 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 2360545 Query 21247 CATAAAATCAAATGGATTTTC 21267 |||||| |||||||||||||| Sbjct 2360546 CATAAAGTCAAATGGATTTTC 2360566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531874916377320