Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013
-01-16] 3,893 sequences; 2,400,150,193 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq1020 370 1e-97
seq417 248 1e-60
seq3 131 2e-25
seq148 123 3e-23
seq158 120 4e-22
>seq1020
Length=850931
Score = 370 bits (410), Expect = 1e-97
Identities = 651/942 (69%), Gaps = 16/942 (2%)
Strand=Plus/Minus
Query 32953 TTTCT-TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCC 33008
||||| ||| |||||| |||| || | |||| ||| ||| | || ||||| | |||
Sbjct 339111 TTTCTCTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCATTCC 339052
Query 33009 CATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATAT 33068
||| | || ||||| || || | || || ||| ||||| || ||||||| ||| ||
Sbjct 339051 CATCCTCTGATATTCGCCTACTCTCTTCTC---AAAGTTAGTCTTCCCTTCCAGTGAAAT 338995
Query 33069 ATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGA 33128
||| ||||| || ||||| ||||| || | ||| || ||| || | ||
Sbjct 338994 ATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCAAAACCTAGCTCCAG 338935
Query 33129 AATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT 33188
|| | || || || ||||| || ||||| ||||| | | |||||||| || ||
Sbjct 338934 CATAAGTCGGTCTGCCACGAACTCAATATACTGCTTCATTAATGTGCAATTCATCCCAAT 338875
Query 33189 AAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTAT 33248
|| || || || | ||| | || || || || || || || || |||| | ||
Sbjct 338874 GAGCTTCACAGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCGAACGGCAT---TAAT 338818
Query 33249 AAT-AGATCTAACGGTTTCTTCACTC--GGTGGATGCAATAAATGTTTAAACATCAAACA 33305
||| | || | | ||| | | ||| || | | ||||| ||||||| ||
Sbjct 338817 AATTATTTCCTTCACTCTCTGCTCGGAAGGTTTGTGGACCAGGTGTTTGAACATCAGGCA 338758
Query 33306 TGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCC 33365
|| || || ||||| | |||||| ||||| ||| | ||||| |||||||| | ||| ||
Sbjct 338757 GGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAGTAAGTTCATTGGAAAAGGCGAGGCC 338698
Query 33366 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGAT 33425
||||| |||||||| || || ||||| ||||| || || || || |||||||||| |||
Sbjct 338697 AGGCATCAGGCCACGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAGGAT 338638
Query 33426 TCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTAT 33482
|||||| || |||||||| || | || | || || || ||| | |||| |
Sbjct 338637 TCCTTCCACAGCAGCAAAAGCCACAACCCGTTCCCCGTAGGTACCCTCTTTGTCCCCAGT 338578
Query 33483 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33542
||| | |||||||| |||||||| |||||||||||||| || || ||||| || ||
Sbjct 338577 CCAATGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCGATGGCGTTGAA 338518
Query 33543 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 33602
|||| | | |||| || |||||||| |||||| || | | ||||| ||||| ||
Sbjct 338517 GAGAAATTCCCTTTCTTTGGAATCTTTAATATAAGTGTCAGTGAGGAGACTGTACATCTC 338458
Query 33603 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 33662
||||| |||||||| ||||| | || || | |||||||| | || || ||||||||
Sbjct 338457 AGAATGGATGTTTTCCATGGCAAATTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTG 338398
Query 33663 TACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 33722
|||||| | ||| || ||| |||| |||||||| || || || ||||| ||||||||
Sbjct 338397 AACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACGATGCCATCACTCGCTGCAAA 338338
Query 33723 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATT 33782
|| |||| || || |||||| ||| | || || || | || | ||| | |
Sbjct 338337 GAAAGCCAGAACGTGGGATATAAAGTATCTCTCCTCAGGCTTCAGGGATTCCCAGTGCTG 338278
Query 33783 GATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 33842
|| || || || | ||| || | ||| |||||||||| || ||||| || || |||||
Sbjct 338277 AATGTCCTTGGAAAGATCCACCTTTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATA 338218
Query 33843 CATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884
| | | ||| || ||| | || | ||| ||||| || |||||
Sbjct 338217 CCTCTGCCAAATATCACAGTACTCGATGGGGAAGATGACAAA 338176
>seq417
Length=2207251
Score = 248 bits (274), Expect = 1e-60
Identities = 302/410 (74%), Gaps = 4/410 (1%)
Strand=Plus/Plus
Query 33289 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 33348
||||| ||||||| || || || || ||||| | |||||| ||||| ||||| |||||
Sbjct 863953 TGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCA 864012
Query 33349 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAAT 33408
|||||||||||||| || ||||| |||| || || || ||||| ||||| || | ||
Sbjct 864013 TTGGAAAACGTGAGGCCAGGCATCAGGCTGCGTTTCTTGAGCCAGAATATCGACTCAAAA 864072
Query 33409 GATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---A 33465
|| |||||||||||||||||||| || ||||||||| | | || | || || || |
Sbjct 864073 GAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTA 864132
Query 33466 CCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 33525
| | |||| ||||| ||||| | |||| ||| ||||||||||||||
Sbjct 864133 GCCTCTTTGTCCCCGATCCAACGCAAGGCCCAGGCTGCCTCCTTCTTTACACAAGGCATT 864192
Query 33526 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 33585
|| || ||||| || |||||| | | |||| | |||||||| ||||| || ||
Sbjct 864193 GTCTCCATGGCGTTGAAGAGAAATTCCCTTTCTTCGGAATCTTTAATGTAAGTGTCAATG 864252
Query 33586 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 33645
| ||||||||||| || |||||||||||||| |||| || || || || ||||||||
Sbjct 864253 AGGAGACTATACATCTCAGAATGAATGTTTTCCATGGTAATTTGGAAGCCATAGAAACAG 864312
Query 33646 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTC 33695
| || || |||||||| |||||| | | || || ||| |||| |||||
Sbjct 864313 CGGGCTTCTGTAATCTGAACTTCT-TGCTTAACCGCTCCACCAAGTTTTC 864361
>seq3
Length=9835568
Score = 131 bits (144), Expect = 2e-25
Identities = 111/137 (81%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396
|| ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| |
Sbjct 152606 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 152665
Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456
|||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | ||||
Sbjct 152666 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 152725
Query 62457 CTATTTCTAAGACCGTA 62473
|| ||||| | ||| ||
Sbjct 152726 CTGTTTCTTATACCATA 152742
Score = 114 bits (126), Expect = 2e-20
Identities = 128/171 (75%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121
|||| ||||| ||||||||||| || |||||| ||| | || || || || ||||| |
Sbjct 150104 TCCAGCCGTAGAAATGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCGATGTGGATGT 150163
Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181
||| |||||| |||||||| ||||| || || || || || ||||| || | | || |
Sbjct 150164 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCTTAAGAACGGTTT 150223
Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232
| |||| ||||||||| | || ||||||| | |||| | || || ||||
Sbjct 150224 TCTGTGAAATTTCCCACACGGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 150274
Score = 100 bits (110), Expect = 4e-16
Identities = 136/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634
|||| || || ||||| || | || || || || ||||| || || || || || || |
Sbjct 157356 CATAGGTTTCATATGGGCCATGCTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 157415
Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694
||||||||||||| ||||||| |||||| || || ||||| | || ||||| ||||
Sbjct 157416 AATAAATGGTTTCAAAGATCTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCAAAAGGAT 157475
Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754
| | | |||||||| || || || | ||||| || || || || || || | ||| |
Sbjct 157476 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCGATTCCAATGGGGCGATGGC 157535
Query 62755 TCTTATTAGA 62764
||||| ||
Sbjct 157536 GTTTATTTGA 157545
Score = 100 bits (110), Expect = 4e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271
|| |||||||||||| |||||||| ||||||||||| || | || || || |||| |
Sbjct 162117 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 162176
Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331
||||| || |||||||| ||||| || | ||| || ||| | | ||| || |||||||
Sbjct 162177 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCCAGAAACTCAAAAATGTCTAAATGCCA 162236
Query 63332 CGGTTCCAAGTATATGGC 63349
|| |||| ||| || ||
Sbjct 162237 AGGCTCCAGGTAAATAGC 162254
>seq148
Length=4816872
Score = 123 bits (136), Expect = 3e-23
Identities = 100/121 (83%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| ||||| ||||| ||||| |||||||| ||||| || ||||| ||||| || || |
Sbjct 2362149 CCTCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGGCCGCGTTTCT 2362208
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||| ||||| || || || || |||||||||||||||||||| || |||||||| |
Sbjct 2362209 TGAGCCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 2362268
Query 33446 C 33446
|
Sbjct 2362269 C 2362269
>seq158
Length=7371824
Score = 120 bits (132), Expect = 4e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387
|| ||||| || || ||||| ||||||||||||||||||||||| || || | || ||
Sbjct 3463986 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCTTT 3463927
Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33447
||||| ||||| | ||| || ||||| || ||||| ||||||||||| |||||||| ||
Sbjct 3463926 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAAGCC 3463867
Query 33448 ATAAGTCTCTCTCC 33461
| || ||| || ||
Sbjct 3463866 ACAACTCTTTCCCC 3463853
Score = 84.2 bits (92), Expect = 3e-11
Identities = 85/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745
|||||||||||||||| ||||| ||||||||||||||||| || |||| || ||||
Sbjct 3458696 CCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATATGTGAGAGATAA 3458637
Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 33796
|||| || || || | | | || || ||||| | | || ||| || ||||
Sbjct 3458636 AATACTTCTCATCCGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 3458586
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622916885831880
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