Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1020 111 4e-19 seq417 98.7 3e-15 seq3 96.9 9e-15 >seq1020 Length=850931 Score = 111 bits (122), Expect = 4e-19 Identities = 332/505 (66%), Gaps = 13/505 (3%) Strand=Plus/Plus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGGAA 22491 ||||| |||||||||||||| || | |||| | |||| || || | | || |||| Sbjct 338548 AAGAAGAAGGCAGATTGGGCCTTGCATTGGACTGGGGACAAAGAGGGTACCTACGGGGAA 338607 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 || || | || ||||||| || ||||| || |||||||||| | ||| | || Sbjct 338608 CGGGTTGTGGCTTTTGCTGCTGTGGAAGGAATCCTCTTTTCTGGTTCTTTTGCATCGATA 338667 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 || ||||| || ||||||| | ||||| || || | ||||| ||||| | | |||| Sbjct 338668 TTCTGGCTCAAGAAACGTGGCCTGATGCCTGGCCTCGCCTTTTCCAATGAACTTACTAGC 338727 Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCAT 22671 ||||||||||| | || || ||||| || || | | || || || | | || Sbjct 338728 AGAGATGAGGGTTTACACTGTGACTTTGCCTGCCTGATGT-TC--AAACACCTGGTCCAC 338784 Query 22672 AAA-CTTCC-ATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTC 22729 ||| ||||| | || | || | || || |||| ||||| ||| | || | Sbjct 338785 AAACCTTCCGAGCAGAGAGTGAA--GGAAATAATTATTAATGCCGTTCGGATAGAGCAGG 338842 Query 22730 TATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTA 22789 || | ||||| || || || | |||||||| || ||| | || ||||| Sbjct 338843 AGTTCCTCACGGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCACATTAATGAAGC 338902 Query 22790 CATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATA 22849 |||||| | || || ||||| || || | | || |||| || ||| || | Sbjct 338903 AGTATATTGAGTTCGTGGCAGACCGACTTATGCTGGAGCTAGGTTTTGGCAAGGTTTTCA 338962 Query 22850 ACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCT 22909 || | ||||||||||| | ||||| ||||||||| ||||| ||||| || || Sbjct 338963 GAGTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGGAAGACTAA---CT 339019 Query 22910 TCGAAAAAAGAGTTGGTGAATACCA 22934 | || || ||||| || ||||| || Sbjct 339020 TTGAGAAGAGAGTAGGCGAATATCA 339044 >seq417 Length=2207251 Score = 98.7 bits (108), Expect = 3e-15 Identities = 333/507 (66%), Gaps = 14/507 (3%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGGAA 22491 ||||| |||||| ||||| || ||||| | |||| || | | | || |||| Sbjct 864179 AAGAAGGAGGCAGCCTGGGCCTTGCGTTGGATCGGGGACAAAGAGGCTACCTACGGGGAA 864120 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTG-CAAT 22550 || || | | ||||||| || ||||| || ||||||||||| | ||||| | | || Sbjct 864119 CGGGTTGTGGACTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTC-TTTTGAGTCGAT 864061 Query 22551 CTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAG 22610 || ||||| || ||||| | ||||| || || |||||||| ||||| | ||||| Sbjct 864060 ATTCTGGCTCAAGAAACGCAGCCTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAG 864001 Query 22611 CCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCA 22670 | ||||||||||| | || || ||||| || || | | || || || | | || Sbjct 864000 CAGAGATGAGGGTTTACACTGTGACTTTGCCTGCCTGATGT-TC--AAACACCTGGTCCA 863944 Query 22671 TAAA-CTTCC-ATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGT 22728 ||| ||||| | | | || | || || |||| ||||| ||| | | || | Sbjct 863943 CAAACCTTCCGAGCAGGGAGTGAA--GGAAATAATTATTAATGCCGTTCAGATAGAGCAG 863886 Query 22729 CTATTTATTTGCGAGGCGTT-ACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAG 22787 ||| || ||||| || ||| |||| ||||||| || ||| | | ||||| Sbjct 863885 GGATTCATCAAGGAGGCCTTGCCCATGAAGT-TCATTGGGATGAATTGCATGTTAATGAA 863827 Query 22788 TACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTA 22847 |||||| | || || ||||| || || | | || |||| || ||| || Sbjct 863826 GCAGTATATTGAGTTCGTGGCAGACCGACTTATGCTGGAGCTAGGTTTTGGCAAGGTTTT 863767 Query 22848 TAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTT 22907 || | ||||||||||| | ||||| ||||||||| ||||| ||||| || || Sbjct 863766 CGGAGTAGAAAATCCATTTGACTATATGGAGAATATTTCACTGGAAGGGAAGACTAACTT 863707 Query 22908 CTTCGAAAAAAGAGTTGGTGAATACCA 22934 ||| | || ||||| || || || || Sbjct 863706 CTTTGTGAAGAGAGTAGGCGAGTATCA 863680 >seq3 Length=9835568 Score = 96.9 bits (106), Expect = 9e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| |||||||| || || || ||| Sbjct 160953 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGTACCCCGTACATG 160894 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| |||| || || || | Sbjct 160893 CTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGAACGATCAAATGC 160834 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || || || | || || ||| Sbjct 160833 AGCAACCTGTGCACAGAAATAGTAGAGTATACC 160801 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 ||||| |||||||| || || |||||| ||| || |||||||||||||| || | Sbjct 162263 GGGGCATTTGCTATTTACCTGGAGCCTTGGCATTTAGACATTTTTGAGTTTCTGGATTTA 162204 Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 ||| ||||| ||||| || ||| |||||| | || || |||| ||| |||||| || Sbjct 162203 AAGAAGAACACAGGAAAGGAAGAACAGCGTGCCAGGGACCTTTTCTTTGCCCTTTGGATT 162144 Query 363958 TCTGACCATTTTATGAAGCGCGTGGAG 363984 | || | || ||||| || |||||| Sbjct 162143 CCAGATCTCTTCATGAAACGAGTGGAG 162117 Score = 87.8 bits (96), Expect = 5e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 364951 CAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATT 365010 |||| ||| |||| | |||| || || ||||||| |||| || ||||| ||||||||| Sbjct 150290 CAGAGCATACCAGAAATTCCTGATGACCTGAAGCAACTTTATAAGACCGTGTGGGAAATT 150231 Query 365011 TCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAG 365070 || | ||| | || | ||||| || || | |||||||| || ||| ||||| Sbjct 150230 TCACAGAAAACCGTTCTTAAGATGGCAGCTGAAAGAGGTGCTTTCATTGATCAAAGCCAA 150171 Query 365071 TCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTAC 365130 || || ||| | ||| || |||| | || | ||| || || |||||||||||| Sbjct 150170 TCTTTGAACATCCACATCGCTGAGCCTAACTATGGCAAACTCACCAGTATGCATTTCTAC 150111 Query 365131 GGGTGGAA 365138 || ||||| Sbjct 150110 GGCTGGAA 150103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303288589944326