Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq47 116 3e-21 seq949 104 2e-17 seq314 102 7e-17 seq85 96.9 3e-15 seq1198 87.8 1e-12 >seq47 Length=4803410 Score = 116 bits (128), Expect = 3e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| ||||||||||| || ||||||||||| | || ||| |||| Sbjct 4289879 CAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTC 4289938 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 ||||| || || || ||| | || | || ||| ||||| || | |||||||||||| Sbjct 4289939 CTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTC 4289998 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 || | | ||| || | | | ||||| | ||||||| |||| ||||||||| Sbjct 4289999 CTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 4290058 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || ||||||| || || ||||| ||||||||| Sbjct 4290059 CTTACCGGTCAAGGTCTTCACAAAGATCTGCATT 4290092 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||||| ||||||||||| || ||||||||||| | | Sbjct 4289637 CCCCCTCTGAGGCGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4289696 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| ||||||||| || || || ||| | || | || ||| ||||| || Sbjct 4289697 AGGGTGCGCCCGTCCTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 4289756 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| || | | ||| || | | | ||||| | ||||||| Sbjct 4289757 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 4289816 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || ||||||| || || || || |||||||| Sbjct 4289817 TCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 4289863 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| ||||||||||| || ||||||||||| | || ||| |||| Sbjct 4289423 CAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTC 4289482 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 ||||| ||||| || ||| | || | || ||| ||||| || | |||||| ||||| Sbjct 4289483 CTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 4289542 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 || | | ||| || | | | ||||| | ||||||| |||| |||||||| Sbjct 4289543 CTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGT 4289602 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||||| || || || || |||||||| Sbjct 4289603 CTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 4289635 >seq949 Length=596474 Score = 104 bits (114), Expect = 2e-17 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || ||||| || || |||||||| || | | || | | || Sbjct 262169 AGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 262228 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| ||| | ||||||| ||| ||||| || | ||||||||| || Sbjct 262229 TCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCT 262288 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | ||||| | ||||||| |||| |||||||| Sbjct 262289 TGGATCTTGGC--CTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGG 262346 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | || |||||||| || || ||||| |||||||||||| Sbjct 262347 TCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTTG 262384 >seq314 Length=2398313 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| |||||||| || || || || ||||| | || || | | || Sbjct 2323437 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGGCCATCT 2323496 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| |||||||||||| |||| || ||||| ||||| || | |||||| ||||| Sbjct 2323497 TCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCT 2323556 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| || || | | | |||||| | |||||| || | |||||||| Sbjct 2323557 TGGATTTTGGCT--TTGACATTCTCAATAGTGTCACTGGGCTCGACCTCGAGGGTGATGG 2323614 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| || || ||||| |||||||| Sbjct 2323615 TCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2323648 >seq85 Length=4131313 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| |||||||| || || || || ||||| | || || | | || Sbjct 1818199 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGGCCATCT 1818258 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| |||||||||||| |||| || ||||| ||||| || | |||||| ||||| Sbjct 1818259 TCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCT 1818318 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| || || | | | || ||| | |||||| || | |||||||| Sbjct 1818319 TGGATTTTGGCT--TTGACATTCTCAATAGCGTCACTGGGCTCGACCTCGAGGGTGATGG 1818376 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| || || ||||| |||||||| Sbjct 1818377 TCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1818410 >seq1198 Length=804178 Score = 87.8 bits (96), Expect = 1e-12 Identities = 152/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| || ||||| || || ||||| || || | | || | | | || Sbjct 573697 CAGAACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAATCAGAAAGAGTGTGGCCATC 573638 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| |||| |||| ||| ||||| || | ||||| ||| || Sbjct 573637 TTCCAGCTGCTTGCCTGCAAAAATGAGCCTCTGCTGGTCAGGGGGGATGCCCTGTTTATC 573578 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || |||||| | | | ||||| | |||||| || | | ||||| Sbjct 573577 TTGGATCTTGGC--CTTCACATTTTCGATGGTGTCACTGGGCTCTACCTCTAGGTTGATG 573520 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || || |||||||| || || || || |||||||||||| Sbjct 573519 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 573481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405068780220070