Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013
-01-16] 3,893 sequences; 2,400,150,193 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq47 116 3e-21
seq949 104 2e-17
seq314 102 7e-17
seq85 96.9 3e-15
seq1198 87.8 1e-12
>seq47
Length=4803410
Score = 116 bits (128), Expect = 3e-21
Identities = 154/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782
||| |||| ||||| ||||||||||| || ||||||||||| | || ||| ||||
Sbjct 4289879 CAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTC 4289938
Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842
||||| || || || ||| | || | || ||| ||||| || | ||||||||||||
Sbjct 4289939 CTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTC 4289998
Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902
|| | | ||| || | | | ||||| | ||||||| |||| |||||||||
Sbjct 4289999 CTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 4290058
Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936
|| ||||||| || || ||||| |||||||||
Sbjct 4290059 CTTACCGGTCAAGGTCTTCACAAAGATCTGCATT 4290092
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| |||| || | ||| |||| ||||| ||||||||||| || ||||||||||| | |
Sbjct 4289637 CCCCCTCTGAGGCGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4289696
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| ||||||||| || || || ||| | || | || ||| ||||| ||
Sbjct 4289697 AGGGTGCGCCCGTCCTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 4289756
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| |||||| ||||| || | | ||| || | | | ||||| | |||||||
Sbjct 4289757 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 4289816
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| ||||||||| || ||||||| || || || || ||||||||
Sbjct 4289817 TCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 4289863
Score = 105 bits (116), Expect = 5e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782
||| |||| ||||| ||||||||||| || ||||||||||| | || ||| ||||
Sbjct 4289423 CAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTC 4289482
Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842
||||| ||||| || ||| | || | || ||| ||||| || | |||||| |||||
Sbjct 4289483 CTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 4289542
Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902
|| | | ||| || | | | ||||| | ||||||| |||| ||||||||
Sbjct 4289543 CTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGT 4289602
Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| ||||||| || || || || ||||||||
Sbjct 4289603 CTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 4289635
>seq949
Length=596474
Score = 104 bits (114), Expect = 2e-17
Identities = 155/218 (71%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || || ||||| || || |||||||| || | | || | | ||
Sbjct 262169 AGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 262228
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|||| || ||||| ||| | ||||||| ||| ||||| || | ||||||||| ||
Sbjct 262229 TCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCT 262288
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || || |||||| | | | ||||| | ||||||| |||| ||||||||
Sbjct 262289 TGGATCTTGGC--CTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGG 262346
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
| || |||||||| || || ||||| ||||||||||||
Sbjct 262347 TCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTTG 262384
>seq314
Length=2398313
Score = 102 bits (112), Expect = 7e-17
Identities = 152/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| ||||| |||||||| || || || || ||||| | || || | | ||
Sbjct 2323437 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGGCCATCT 2323496
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|||| |||||||||||| |||| || ||||| ||||| || | |||||| |||||
Sbjct 2323497 TCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCT 2323556
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || ||| || || | | | |||||| | |||||| || | ||||||||
Sbjct 2323557 TGGATTTTGGCT--TTGACATTCTCAATAGTGTCACTGGGCTCGACCTCGAGGGTGATGG 2323614
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| || || ||||| || || ||||| ||||||||
Sbjct 2323615 TCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2323648
>seq85
Length=4131313
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| ||||| |||||||| || || || || ||||| | || || | | ||
Sbjct 1818199 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGGCCATCT 1818258
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|||| |||||||||||| |||| || ||||| ||||| || | |||||| |||||
Sbjct 1818259 TCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCT 1818318
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || ||| || || | | | || ||| | |||||| || | ||||||||
Sbjct 1818319 TGGATTTTGGCT--TTGACATTCTCAATAGCGTCACTGGGCTCGACCTCGAGGGTGATGG 1818376
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| || || ||||| || || ||||| ||||||||
Sbjct 1818377 TCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1818410
>seq1198
Length=804178
Score = 87.8 bits (96), Expect = 1e-12
Identities = 152/219 (69%), Gaps = 4/219 (2%)
Strand=Plus/Minus
Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782
||| |||| ||||| || ||||| || || ||||| || || | | || | | | ||
Sbjct 573697 CAGAACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAATCAGAAAGAGTGTGGCCATC 573638
Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842
|||| || ||||| ||| |||| |||| ||| ||||| || | ||||| ||| ||
Sbjct 573637 TTCCAGCTGCTTGCCTGCAAAAATGAGCCTCTGCTGGTCAGGGGGGATGCCCTGTTTATC 573578
Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900
|| || || |||||| | | | ||||| | |||||| || | | |||||
Sbjct 573577 TTGGATCTTGGC--CTTCACATTTTCGATGGTGTCACTGGGCTCTACCTCTAGGTTGATG 573520
Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
|| || |||||||| || || || || ||||||||||||
Sbjct 573519 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 573481
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405068780220070
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |