Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1020 239 5e-58 seq1832 176 5e-39 seq417 172 6e-38 seq148 91.5 2e-13 >seq1020 Length=850931 Score = 239 bits (264), Expect = 5e-58 Identities = 527/782 (67%), Gaps = 6/782 (1%) Strand=Plus/Minus Query 92927 TCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACA 92986 || || || || || || ||||| ||| || |||||||| || | || ||| Sbjct 338924 TCTGCCACGAACTCAATATACTGCTTCATTAATGTGCAATTCATCCCAATGAGCTTCACA 338865 Query 92987 GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTATT 93046 || | || || || | ||| || | ||| || |||||| | | | ||||| | Sbjct 338864 GGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCGAACGGCATTAATAATTATTTCCTTC 338805 Query 93047 ACTCTACTATTTGGT-GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGT 93105 ||||| || | || ||||| || || | | ||| |||| | ||| |||||||| Sbjct 338804 ACTCT-CTGCTCGGAAGGTTTGTGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTCACA 338746 Query 93106 ATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGGTAACAGTC 93164 |||||||| || |||| || || || | ||||| || | | || || | ||| | Sbjct 338745 GTGTAAACCCTCATCTC-TGCTAGTAAGTTCATTGGAAAAGGCGAGGCCAGGCATCAGGC 338687 Query 93165 CTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGG 93224 | |||||||||||||| ||||| || |||||| ||||||||| | || |||||||| | Sbjct 338686 CACGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAGGATTCCTTCCACAG 338627 Query 93225 CTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAG 93284 | ||||| ||||||| ||||| | | | | || | |||| | || | Sbjct 338626 CAGCAAAAGCCACAACCCGTTCCCCGTAGGTACCCTCTTTGTCCCCAGTCCAATGCAAGG 338567 Query 93285 CCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 ||||||| || || ||||| | |||||| | ||| ||||| ||||| || || | || | Sbjct 338566 CCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCGATGGCGTTGAAGAGAAATTCCC 338507 Query 93345 GCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACAT 93404 || | |||||| || || || || | | ||| ||||| |||||||||| | Sbjct 338506 TTTCTTTGGAATCTTTAATATAAGTGTCAGTGAGGAGACTGTACATCTCAGAATGGATGT 338447 Query 93405 TCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAG 93464 | ||||| |||| |||||| | |||||||| | ||||| || ||||| |||||||| Sbjct 338446 TTTCCATGGCAAATTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGC 338387 Query 93465 AAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATA 93524 ||| | ||| || | |||||||| || || ||||| |||||||| ||||||| | Sbjct 338386 TAAACCGCTCCACCAAGTTTTCATTTACGATGCCATCACTCGCTGCAAAGAAAGCCAGAA 338327 Query 93525 TATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATAGATCTTTT 93583 || |||||| | | |||| ||| || || ||||| | | || | || || Sbjct 338326 CGTGGGATATAAAGTATCTCTCCTCAGGCTTCAGGGATTCCCAGTGCTGA-ATGTCCTTG 338268 Query 93584 GAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCAT 93643 |||||||| || | ||| | |||||||| || || || ||||| || ||| | | ||| Sbjct 338267 GAAAGATCCACCTTTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACCTCTGCCAA 338208 Query 93644 ATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGC 93703 || || || | || || || |||||||| || |||||| ||| | || | ||| Sbjct 338207 ATATCACAGTACTCGATGGGGAAGATGACAAAGTGACGAGGGTTTTCTCTCAGGAGTGGC 338148 Query 93704 TC 93705 || Sbjct 338147 TC 338146 >seq1832 Length=302895 Score = 176 bits (194), Expect = 5e-39 Identities = 436/653 (67%), Gaps = 13/653 (2%) Strand=Plus/Plus Query 93062 GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCT 93121 ||||| || || | | ||| |||| | | | |||||||| |||||||| || ||| Sbjct 206723 GGTTTATGGACCAGGTGTTTGAACATCAGGTAGGCAAAGTCACGGTGTAAACCCTCATCT 206782 Query 93122 CGTGATATCAA-CTCATTGCTGAAT-GTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCC 93179 | || || || ||||||| || || | || || | ||| | | ||||||||||| Sbjct 206783 C-TGCTAATAAGCTCATTGGAAAACAGTGAGGCCAGGCATCAGGCTGCATTTCTTGAGCC 206841 Query 93180 AAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAA 93239 | |||| | ||| || |||| |||| | || |||||| ||| ||||| |||||| Sbjct 206842 AGTATATCAACGCAGAAGAACCAAAAAAGGAGATTCCTTCCGTGGCAGCAAAGTCCACAA 206901 Query 93240 TACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTT 93299 | ||| | | | || || | | ||| | || ||||||| || || | Sbjct 206902 CCCATTCCCCGTAGGTAGCCTCTTTGTCCCCAACCCAATGCAAGGCCCAATTTGCCTTCT 206961 Query 93300 TCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTC 93359 || | |||||| | ||| || || | ||| || || | || | ||| | |||||| Sbjct 206962 TCCTTCCACAAGGCATTGTCTCCATGGTGTTGAAGAGAAATTCCCTCTCTTTGGAATCT- 207020 Query 93360 GTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTT 93419 ||| || || || | | ||| | |||| |||||||||| || ||||| ||||||| Sbjct 207021 -TATATAAGTGTCAGTGAGGAGACTACACATCTCAGAATGGATGTTTTCCATGGCAATTT 207079 Query 93420 GGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGA 93479 |||| || |||||||| | ||||| || ||||| || ||||| | | | ||| || | Sbjct 207080 GGAAGCCATAGAAACAGCAGGCTTCTGTCATCTGAACCTCTTGGCCACACCACTCCACCA 207139 Query 93480 GATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATG--CTT----TA 93533 |||||||| ||||| ||| | ||| |||| ||||||| | || | | || Sbjct 207140 AGTTTTCATTTACTATGCCAACACTTGCCACAAAGAAAGCCAGAACGTGAACGTGGGGTA 207199 Query 93534 TAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATAGATCTTTTGAAAGATCG 93592 |||||| | |||| ||| || || ||||| | | || | || || ||||||| Sbjct 207200 TAAAATCTCTCTCCTCAGGCTTCAGGGATTCCCAGTGCTGA-ATGTCCTTGGAAAGATTC 207258 Query 93593 ACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGA 93652 || |||| | |||||||| || || || ||||| || |||| | ||| | || ||| Sbjct 207259 ACCTCTTTAGCTGTCCAAAAAGAAGCCTCAGCTTTCTTACACATCTGCCAAAGATCATGA 207318 Query 93653 TATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 || | || || || |||| ||| | | |||||| ||| | |||| ||||| Sbjct 207319 TACTCCATAGGGAAGATGAGAAAGCAAAGAGGGTTTTCTGTCAGTAGGGGCTC 207371 >seq417 Length=2207251 Score = 172 bits (190), Expect = 6e-38 Identities = 281/402 (70%), Gaps = 2/402 (0%) Strand=Plus/Plus Query 93062 GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCT 93121 ||||| || || | | ||| |||| | ||| |||||||| |||||||| || ||| Sbjct 863938 GGTTTGTGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCT 863997 Query 93122 CGTGATATCAACT-CATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCA 93180 | || || || | ||||| || || | || || | ||| | |||||||||||||| Sbjct 863998 C-TGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCTGCGTTTCTTGAGCCA 864056 Query 93181 AAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAAT 93240 ||||| || ||||| ||||||||| || || |||||||| || ||||| |||||| Sbjct 864057 GAATATCGACTCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAAC 864116 Query 93241 ACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTT 93300 ||||| | | | || || | |||||| || ||||| | || | || Sbjct 864117 CCGTTCCCCGTAGGTAGCCTCTTTGTCCCCGATCCAACGCAAGGCCCAGGCTGCCTCCTT 864176 Query 93301 CTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCG 93360 ||| | |||||| | ||| || || ||||| || || | || | || || |||||| Sbjct 864177 CTTTACACAAGGCATTGTCTCCATGGCGTTGAAGAGAAATTCCCTTTCTTCGGAATCTTT 864236 Query 93361 TATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTG 93420 ||||| || || || | ||| |||||| |||||||| | || ||||| | |||||| Sbjct 864237 AATGTAAGTGTCAATGAGGAGACTATACATCTCAGAATGAATGTTTTCCATGGTAATTTG 864296 Query 93421 GAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 ||| || |||||||| | ||||| || ||||| |||||||| Sbjct 864297 GAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTG 864338 >seq148 Length=4816872 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| || || | || || | ||| || |||||||||||||| ||||| || ||| Sbjct 2362169 TCATTGGAAAAGGTGAGGCCAGGCATCAGGCCGCGTTTCTTGAGCCAGAATATCGACGCA 2362228 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||| ||||||||| || || |||||||| || ||||| ||||||| ||||| Sbjct 2362229 AAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCCACAACCCGTTC 2362281 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| || || || || || | ||| ||||| |||||||||| || ||||| Sbjct 2364178 GAATCTTTAATATAAGTGTCAATGAGGAGACTGTACATCTCAGAATGGATGTTTTCCATG 2364237 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 ||||||||||| || |||||||| | ||||| || ||||| |||||||| Sbjct 2364238 GCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTG 2364287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556833701761320