Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013
-01-16] 3,893 sequences; 2,400,150,193 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq1020 147 4e-30
seq417 140 6e-28
seq158 84.2 4e-11
>seq1020
Length=850931
Score = 147 bits (162), Expect = 4e-30
Identities = 366/550 (67%), Gaps = 17/550 (3%)
Strand=Plus/Plus
Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482
||||| ||||| || || ||| ||||| || ||||| ||| ||| |||| |
Sbjct 338329 CTGGCTTTCTTTGCAGCGAGTGATGGCATCGTAAATGAAAACTTGGTGGAGCGGTTTAGC 338388
Query 42483 AAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGA 42540
|||| || ||| ||| || || ||||| ||||| | |||||| | ||||| || |
Sbjct 338389 CAAGAAGTTCAGATTACA--GAAGCCCGCTGTTTCTATGACTTCCAATTTGCCATGGAAA 338446
Query 42541 ACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCG 42597
|| | || |||||| ||||| | || |||| |||| || || ||| || |
Sbjct 338447 ACATCCATTCTGAGATGTAC---AGTCTCCTCACTGACACTTATATTAAAGATTCCAAAG 338503
Query 42598 AGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACT 42657
| | | || ||||| ||||| ||||| ||||| || | ||||||||||| || |
Sbjct 338504 AAAGGGAATTTCTCTTCAACGCCATCGAGACAATGCCTTGTGTAAAGAAGAAGGCAGATT 338563
Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717
|||| | | |||| | | || | || | ||| || || | || || |||
Sbjct 338564 GGGCCTTGCATTGGACTGGGGACAAAGAGGGTACCTACGGGGAACGGGTTGTGGCTTTTG 338623
Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA 42777
| || || || || ||| |||| || || | || || || || |||||||||||| |
Sbjct 338624 CTGCTGTGGAAGGAATCCTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTCAAGAA-- 338681
Query 42778 AGGTGTC--GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCT 42835
| ||| | |||||| || ||| |||| || || ||||| | ||||| || ||||| |
Sbjct 338682 ACGTGGCCTGATGCCTGGCCTCGCCTTTTCCAATGAACTTACTAGCAGAGATGAGGGTTT 338741
Query 42836 GCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGA 42895
|| | |||||||||||||| ||||| | ||||| ||||| || || || |
Sbjct 338742 ACACTGTGACTTTGCCTGCCTGATGTTC---AAACACCTGGTCCACAAACCTTCCGAGCA 338798
Query 42896 GCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTC 42955
| | || || || || | | ||||| ||| ||| |||||||||||||| || |
Sbjct 338799 GAGAGTGAAGGAAATAATTATTAATGCCGTTCGGATAGAGCAGGAGTTCCTCACGGAGGC 338858
Query 42956 GCTGCCCGTG 42965
|||| |||
Sbjct 338859 CTTGCCTGTG 338868
>seq417
Length=2207251
Score = 140 bits (154), Expect = 6e-28
Identities = 315/469 (67%), Gaps = 11/469 (2%)
Strand=Plus/Minus
Query 42501 GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTAC 42560
|| || ||||| ||||| |||||||| || |||| || ||| | || |||||| ||||
Sbjct 864320 GAAGCCCGCTGTTTCTATGGCTTCCAAATTACCATGGAAAACATTCATTCTGAGATGTAT 864261
Query 42561 GCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAG 42617
| || |||| |||| ||||| ||| ||| || | | || |||||
Sbjct 864260 ---AGTCTCCTCATTGACACTTACATTAAAGATTCCGAAGAAAGGGAATTTCTCTTCAAC 864204
Query 42618 GCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAG 42677
||||||||||| ||||| || | |||||| |||| | |||||| | ||||||| |
Sbjct 864203 GCCATGGAGACAATGCCTTGTGTAAAGAAGGAGGCAGCCTGGGCCTTGCGTTGGATCGGG 864144
Query 42678 AGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTC 42737
|| || || | ||| || || | || | |||| | || || || || ||||||
Sbjct 864143 GACAAAGAGGCTACCTACGGGGAACGGGTTGTGGACTTTGCTGCTGTGGAAGGAATCTTC 864084
Query 42738 TTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACT 42796
|| || || | || | || || |||||||||||| | | | | | |||||| || ||
Sbjct 864083 TTTTCTGGTTCTTTTGAGTCGATATTCTGGCTCAAG-AAACGCAGCCTGATGCCTGGCCT 864025
Query 42797 CACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCT 42856
||| || || || ||||| || ||||| || ||||| | || | ||||||||||||||
Sbjct 864024 CACGTTTTCCAATGAACTTATTAGCAGAGATGAGGGTTTACACTGTGACTTTGCCTGCCT 863965
Query 42857 CCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCAC 42916
||||| | ||||| ||||| || || || || | || || || || |
Sbjct 863964 GATGTTC---AAACACCTGGTCCACAAACCTTCCGAGCAGGGAGTGAAGGAAATAATTAT 863908
Query 42917 GGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTG 42965
| ||||| |||| ||| ||| ||| ||| | || | ||||| ||
Sbjct 863907 TAATGCCGTTCAGATAGAGCAGGGATTCATCAAGGAGGCCTTGCCCATG 863859
>seq158
Length=7371824
Score = 84.2 bits (92), Expect = 4e-11
Identities = 94/123 (76%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767
|| || ||| | || || || || || ||||||||||| | || || | || ||||||
Sbjct 3463865 GTGGCTTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCTGCTATATTCTGG 3463924
Query 42768 CTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826
|| ||| | | |||| || |||||||||||||| || || || |||||||||||||| ||
Sbjct 3463925 CTAAAGAAAAGAGGTCTC-ATGCCCGGACTCACGTTTTCCAATGAACTCATCAGCAGAGA 3463983
Query 42827 CGA 42829
||
Sbjct 3463984 TGA 3463986
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944293246093680
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