Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1020 147 4e-30 seq417 140 6e-28 seq158 84.2 4e-11 >seq1020 Length=850931 Score = 147 bits (162), Expect = 4e-30 Identities = 366/550 (67%), Gaps = 17/550 (3%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 ||||| ||||| || || ||| ||||| || ||||| ||| ||| |||| | Sbjct 338329 CTGGCTTTCTTTGCAGCGAGTGATGGCATCGTAAATGAAAACTTGGTGGAGCGGTTTAGC 338388 Query 42483 AAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGA 42540 |||| || ||| ||| || || ||||| ||||| | |||||| | ||||| || | Sbjct 338389 CAAGAAGTTCAGATTACA--GAAGCCCGCTGTTTCTATGACTTCCAATTTGCCATGGAAA 338446 Query 42541 ACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCG 42597 || | || |||||| ||||| | || |||| |||| || || ||| || | Sbjct 338447 ACATCCATTCTGAGATGTAC---AGTCTCCTCACTGACACTTATATTAAAGATTCCAAAG 338503 Query 42598 AGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACT 42657 | | | || ||||| ||||| ||||| ||||| || | ||||||||||| || | Sbjct 338504 AAAGGGAATTTCTCTTCAACGCCATCGAGACAATGCCTTGTGTAAAGAAGAAGGCAGATT 338563 Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717 |||| | | |||| | | || | || | ||| || || | || || ||| Sbjct 338564 GGGCCTTGCATTGGACTGGGGACAAAGAGGGTACCTACGGGGAACGGGTTGTGGCTTTTG 338623 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA 42777 | || || || || ||| |||| || || | || || || || |||||||||||| | Sbjct 338624 CTGCTGTGGAAGGAATCCTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTCAAGAA-- 338681 Query 42778 AGGTGTC--GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCT 42835 | ||| | |||||| || ||| |||| || || ||||| | ||||| || ||||| | Sbjct 338682 ACGTGGCCTGATGCCTGGCCTCGCCTTTTCCAATGAACTTACTAGCAGAGATGAGGGTTT 338741 Query 42836 GCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGA 42895 || | |||||||||||||| ||||| | ||||| ||||| || || || | Sbjct 338742 ACACTGTGACTTTGCCTGCCTGATGTTC---AAACACCTGGTCCACAAACCTTCCGAGCA 338798 Query 42896 GCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTC 42955 | | || || || || | | ||||| ||| ||| |||||||||||||| || | Sbjct 338799 GAGAGTGAAGGAAATAATTATTAATGCCGTTCGGATAGAGCAGGAGTTCCTCACGGAGGC 338858 Query 42956 GCTGCCCGTG 42965 |||| ||| Sbjct 338859 CTTGCCTGTG 338868 >seq417 Length=2207251 Score = 140 bits (154), Expect = 6e-28 Identities = 315/469 (67%), Gaps = 11/469 (2%) Strand=Plus/Minus Query 42501 GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTAC 42560 || || ||||| ||||| |||||||| || |||| || ||| | || |||||| |||| Sbjct 864320 GAAGCCCGCTGTTTCTATGGCTTCCAAATTACCATGGAAAACATTCATTCTGAGATGTAT 864261 Query 42561 GCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAG 42617 | || |||| |||| ||||| ||| ||| || | | || ||||| Sbjct 864260 ---AGTCTCCTCATTGACACTTACATTAAAGATTCCGAAGAAAGGGAATTTCTCTTCAAC 864204 Query 42618 GCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAG 42677 ||||||||||| ||||| || | |||||| |||| | |||||| | ||||||| | Sbjct 864203 GCCATGGAGACAATGCCTTGTGTAAAGAAGGAGGCAGCCTGGGCCTTGCGTTGGATCGGG 864144 Query 42678 AGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTC 42737 || || || | ||| || || | || | |||| | || || || || |||||| Sbjct 864143 GACAAAGAGGCTACCTACGGGGAACGGGTTGTGGACTTTGCTGCTGTGGAAGGAATCTTC 864084 Query 42738 TTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACT 42796 || || || | || | || || |||||||||||| | | | | | |||||| || || Sbjct 864083 TTTTCTGGTTCTTTTGAGTCGATATTCTGGCTCAAG-AAACGCAGCCTGATGCCTGGCCT 864025 Query 42797 CACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCT 42856 ||| || || || ||||| || ||||| || ||||| | || | |||||||||||||| Sbjct 864024 CACGTTTTCCAATGAACTTATTAGCAGAGATGAGGGTTTACACTGTGACTTTGCCTGCCT 863965 Query 42857 CCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCAC 42916 ||||| | ||||| ||||| || || || || | || || || || | Sbjct 863964 GATGTTC---AAACACCTGGTCCACAAACCTTCCGAGCAGGGAGTGAAGGAAATAATTAT 863908 Query 42917 GGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTG 42965 | ||||| |||| ||| ||| ||| ||| | || | ||||| || Sbjct 863907 TAATGCCGTTCAGATAGAGCAGGGATTCATCAAGGAGGCCTTGCCCATG 863859 >seq158 Length=7371824 Score = 84.2 bits (92), Expect = 4e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 || || ||| | || || || || || ||||||||||| | || || | || |||||| Sbjct 3463865 GTGGCTTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCTGCTATATTCTGG 3463924 Query 42768 CTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 || ||| | | |||| || |||||||||||||| || || || |||||||||||||| || Sbjct 3463925 CTAAAGAAAAGAGGTCTC-ATGCCCGGACTCACGTTTTCCAATGAACTCATCAGCAGAGA 3463983 Query 42827 CGA 42829 || Sbjct 3463984 TGA 3463986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944293246093680