Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq47 89.7 5e-13 seq174 84.2 2e-11 seq33 84.2 2e-11 >seq47 Length=4803410 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || ||| |||||| || || || |||| | Sbjct 4289898 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCCTCCAGCTGCTTCCCGGCA 4289957 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | | ||| ||||| || || || || |||||||| ||| || || | Sbjct 4289958 AAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGGATCTTCGCCTTGACA 4290017 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||||||||| | || | || ||||| |||| || || Sbjct 4290018 TTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTC 4290077 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 4290078 ACAAAGATCTGCAT 4290091 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || ||| |||||| || ||||| |||| | Sbjct 4289442 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCCTCCAGCTGTTTCCCGGCA 4289501 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | | ||| ||||| || || || || || ||||| ||| || || | Sbjct 4289502 AAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACA 4289561 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||||||||| | || | || || || |||| || || Sbjct 4289562 TTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCGGTCAAGGTCTTC 4289621 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 4289622 ACGAAGATCTGCATG 4289636 >seq174 Length=4297676 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||| ||||||| | || ||| | ||| || ||||| || || | Sbjct 3533491 GACTCCTTTTGAATGCTGTAGTCACACAAAGTTTGTCTGTCTTCCAGTTGCTTGCCAGCG 3533432 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| || || ||||| || ||||| || || ||| || |||| Sbjct 3533431 AAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 3533372 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| || || || | || || | ||||| || | || || || | || ||||| Sbjct 3533371 TTTTCTACTGTATCTGAGGATTCAATCTCGAGAGTGATGGTCTTCCCCATAAGGGTTTTC 3533312 Query 138601 ACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 3533311 ACAAAAATCTGCAT 3533298 >seq33 Length=6086033 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||||||||||| || ||| || || || ||||| || || | | Sbjct 2214802 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCA 2214861 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 | || || | ||| || || ||||| || ||||| || || ||| | |||| |||| Sbjct 2214862 AATATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC-CTGAATCTTTGCCTTTAC 2214920 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||||| || | | | || ||||||| || | || || || || || ||||| Sbjct 2214921 ATTTTCCATTGTACCCGAGGGTTCAACCTCGAGAGTGATGGTCTTCCCCGTAAGGGTTTT 2214980 Query 138600 TACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 2214981 CACGAAAATCTGCAT 2214995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496238250630960