Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq265 165 1e-35 seq565 109 8e-19 >seq265 Length=2706884 Score = 165 bits (182), Expect = 1e-35 Identities = 217/301 (72%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934 ||| | ||| || | || ||||| |||||||| || || ||||| |||||||| | Sbjct 501303 AACACTGAATGCAGTAAAAGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATTGA 501244 Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 || || || | ||| | || ||||| || || || || ||||| || |||||||| | Sbjct 501243 GGCAGTGTTGATGATTTTAAAGCCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTAGTC 501184 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054 ||||| |||||| || |||| || ||||||||||| || || || |||| || | Sbjct 501183 AGGGGAACAGATGGGATTACCCATAAGTCCTTTCAAGGAGAATGGCGCTCCCATTTCTAC 501124 Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114 ||| ||||||| ||||||||| | ||||| || ||||| | | || | ||| || || Sbjct 501123 CATGGTCTCACCAAAGATGGCATCTGGACGAGGCTTTTCTAGCAGGAGGGCAGGATACAG 501064 Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174 ||| | || || | || ||||| ||||| || ||| | ||||| || |||||||| || Sbjct 501063 TTCCATGGCATCAATATCACCATAAAGGGCCTCTAACCCCGCAGCCATTTCCTTCTCTCC 501004 Query 9175 T 9175 | Sbjct 501003 T 501003 Score = 152 bits (168), Expect = 7e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || || | | |||| ||| |||| || || || || ||||| || |||||||| || Sbjct 499881 GTCTGGAATAGCCGCTCATCATCCCACTCTGGATGCTCCTGTTTAAGCACATCGCACACT 499822 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 ||||||||||| | ||||| || |||||||||||||| | ||| ||||| | || || Sbjct 499821 CTGTTGTGTTCCCGTAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAGCCCGAAG 499762 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 ||||| | ||||| ||||| || || | || || || | ||| | || | ||| | | Sbjct 499761 ACTTCCTGGCCCACAGCAAACCGTAGGTGTTCAGGAACATGGGGTGGGTAGATCATCTCC 499702 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCT 9967 ||||| || |||||||| ||||| ||||||| || || ||||| |||| Sbjct 499701 ACCTGAGTATCTTTGACTGTGGGAGGATACACCTCTCCATCAATTACCT 499653 Score = 122 bits (134), Expect = 1e-22 Identities = 133/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| |||| | |||||||| || |||||| ||| ||| | || Sbjct 498820 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 498761 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 |||||| || || ||||| || | || || || ||||||| || |||||||||||||| Sbjct 498760 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 498701 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 || || || | || | | || || ||| |||||||||| | ||||||| || || Sbjct 498700 AGGAATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTTGAATCAGGAAG 498644 Score = 105 bits (116), Expect = 1e-17 Identities = 196/286 (69%), Gaps = 4/286 (1%) Strand=Plus/Minus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 ||||||||||| || |||| || || || || |||| | || || | | | || Sbjct 500482 CCGGCAATCTGCCTGCTGAATGACTCCACAAACTGGGTAAGCCCATGTTCCAGCAATATA 500423 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 || |||||||| | || || | | || |||| | ||| |||| | || ||| Sbjct 500422 GAGTTGTTGTAGATAAACTGCTGGAAATTGTACTCCTGGTCATCTATTTGCAAGGTGTCA 500363 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 |||| || | ||||||| ||||||| || || ||||| || || || ||||| |||||| Sbjct 500362 GGCAGAAGGGGATGCCAGTGGTAGAGTGTGTTAAACTCAGCAGCAATACGGTTTTGGTAC 500303 Query 9616 TGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673 || || | ||| ||| || | ||| |||||||| | |||| ||||| || |||| Sbjct 500302 TGGAATTGTTGGT--TGAAAAGCAGCTCTGGGTCAAACTTCAGCTTGAAGTAATAGCCGC 500245 Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 | | ||||| || || | | || | ||| ||||||||||| || Sbjct 500244 TCAAGTGCTGTACGTAGTCTTCAATCACAATCTTAATGGTTTCTCC 500199 Score = 104 bits (114), Expect = 3e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | || || || |||||| || || || || |||| ||| || Sbjct 498227 TCACCTTTCACACCCATGGGTGTTGGACAGTCATCAGCCACAGGGGGAAGAGCTCTGGTG 498168 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 || ||||| ||||| || || ||||||||||| || |||||||| || | |||||| Sbjct 498167 TAGTAGGAGAGATTGGAGAAGGCTTCCCAGCTTTTATAGCCATAGTCCACGTTGTAAGTT 498108 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || ||||| ||||||| | ||||||||| Sbjct 498107 GGTGGACTCTCAATCAAATGTGACCTGGCT 498078 >seq565 Length=1946861 Score = 109 bits (120), Expect = 8e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 8963 TCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGC 9022 || || || || ||||| |||||||||||| | || ||||||||| ||| | | ||| Sbjct 1920266 TCACCACCAAATGTGCTCGGTTTCCAGTACTCTGGAGAGCAGATGGGATTCCCTAGGAGG 1920207 Query 9023 CCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGA 9082 || || | |||||| |||||||| | || || || ||||| || ||||||| ||| Sbjct 1920206 CCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATACTCTCCCCAAAGATGGAGTTTGGA 1920147 Query 9083 CGCGGTTTTTCGACGATGAAG-CCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAG 9141 | || || | || | || || | ||||| || | || |||| ||| ||||| || Sbjct 1920146 TGGCACTTCTCCA-GAAGCAGCCCCGGGTAGAACTCCAAGGCATCGATGTCTCCATACAG 1920088 Query 9142 GGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 | ||||||||||| || ||||||||||| ||| Sbjct 1920087 CTCCTCCAACTCGGCTGCGATCTCCTTCTCCCCT 1920054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723692781586200