Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1020 367 1e-96 seq417 250 3e-61 seq1832 246 3e-60 seq158 120 3e-22 seq148 111 2e-19 seq3 107 2e-18 >seq1020 Length=850931 Score = 367 bits (406), Expect = 1e-96 Identities = 652/940 (69%), Gaps = 17/940 (2%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || || || ||| | |||||| Sbjct 339105 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGACTTGACATCATTCCCATC 339048 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||||||| | ||||| || |||||| ||||| || || || | ||| ||| Sbjct 339047 CTCTGATATTCGCCTACTCTCTTCTCAAAG---TTAGTCTTCCCTTCCAGTGAAATATTC 338991 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 |||||||| ||||||||||||| ||| | | | || || |||| || | | Sbjct 338990 TCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCAAAACCTAGCTCCAGCATA 338931 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 |||| || || || || | |||||| ||||| | |||||||| || || | Sbjct 338930 AGTCGGTCTGCCACGAACTCAATATACTGCTTCATTAATGTGCAATTCATCCCAATGAGC 338871 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 || ||||| | || || || || || || || ||||| || || | | ||| | || Sbjct 338870 TTCACAGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCGAACGGCAT-TAATA-ATTA 338813 Query 18910 GATACAACTCTATCTTCATTAGGAGGGTATA--GA--AGATGTTTAAACATCAAACATGC 18965 | | | || ||| | | ||| ||| | || || ||||| ||||||| || || Sbjct 338812 TTTCCTTCACTCTCTGC--TCGGAAGGTTTGTGGACCAGGTGTTTGAACATCAGGCAGGC 338755 Query 18966 AAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGG 19025 ||| ||||| |||| ||||| ||||| || | | |||||| ||||| | | ||||| Sbjct 338754 AAAGTCACAGTGTAAACCCTCATCTCTGCTAGTAAGTTCATTGGAAAAGGCGAGGCCAGG 338695 Query 19026 CATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACC 19085 |||||| || | ||| || | ||||||||| || ||||| || |||||||||| || || Sbjct 338694 CATCAGGCCACGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAGGATTCC 338635 Query 19086 TTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCA 19145 ||| || || |||||||| || | | ||| || || || | || || | | |||| Sbjct 338634 TTCCACAGCAGCAAAAGCCACAACCCGTTCCCCGTAGGTACCCTCTTTGTCCCCAGTCCA 338575 Query 19146 TTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205 | || |||||||| |||||||| |||||||| ||||||||||| || | || || || Sbjct 338574 ATGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCGATGGCGTTGAAGAG 338515 Query 19206 ATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGA 19265 | | | || | | |||||||| ||| | || | | | ||||||||| || || Sbjct 338514 AAATTCCCTTTCTTTGGAATCTTTAATATAAGTGTCAGTGAGGAGACTGTACATCTCAGA 338455 Query 19266 ATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTAC 19325 ||| || ||||| || || | || || | || ||||| | |||||||| ||||| || Sbjct 338454 ATGGATGTTTTCCATGGCAAATTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAAC 338395 Query 19326 TTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAA 19385 ||| | ||| | || ||||| |||||||| || || |||||||| |||||||| || Sbjct 338394 TTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACGATGCCATCACTCGCTGCAAAGAA 338335 Query 19386 TGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTAA 19444 || | || || ||||| | | | || || | | || | | ||| ||| | | || Sbjct 338334 AGCCAGAACGTGGGATATAAAGTATCTCTCCTCAG-GCTTCAGGGATTCCCAGTGCTGAA 338276 Query 19445 TATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACA 19504 | || || || | ||| || | |||| |||||||||| |||||||| ||||| |||||| Sbjct 338275 TGTCCTTGGAAAGATCCACCTTTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACC 338216 Query 19505 TGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 | | ||| ||||||| || | || || || || ||||| Sbjct 338215 TCTGCCAAATATCACAGTACTCGATGGGGAAGATGACAAA 338176 >seq417 Length=2207251 Score = 250 bits (276), Expect = 3e-61 Identities = 496/725 (68%), Gaps = 16/725 (2%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || || || ||| | |||||| Sbjct 863619 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGACTTGACATCATTCCCATC 863676 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | ||||| || ||||||| ||||| || || || | ||| ||| Sbjct 863677 CTCTGATACTCGCCTACTCTCTTCACAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTC 863736 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 |||||| | ||||||||||||| ||| | | || || |||| || | | Sbjct 863737 TCCATATAGTCAAATGGATTTTCTACTCCGAAAACCTTGCCAAAACCTAGCTCCAGCATA 863796 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCA--CAATTCATTCCTATTA 18847 |||| || || || || | |||||| ||||| || || |||||||| || || | Sbjct 863797 AGTCGGTCTGCCACGAACTCAATATACTGCTTCAT--TAACATGCAATTCATCCCAATGA 863854 Query 18848 ATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAA 18907 | || | || | || || | | ||| | || ||||| | || || | | ||| | Sbjct 863855 ACTTCATGGGCAAGGCCTCCTTGATGAATCCCTGCTCTATCTGAACGGCAT-TAATA-AT 863912 Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATA--GA--AGATGTTTAAACATCAAACAT 18963 || | | | || || | | ||| ||| | || || ||||| ||||||| || Sbjct 863913 TATTTCCTTCACTCCCTGC--TCGGAAGGTTTGTGGACCAGGTGTTTGAACATCAGGCAG 863970 Query 18964 GCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCA 19023 ||||| ||||| |||| ||||| ||||| || || | |||||| ||||| || | ||| Sbjct 863971 GCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCA 864030 Query 19024 GGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATA 19083 |||||||| | | ||| || | ||||||||| || |||| || ||||||||||| || Sbjct 864031 GGCATCAGGCTGCGTTTCTTGAGCCAGAATATCGACTCAAAAGAACCAGAAAAGAAGATT 864090 Query 19084 CCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATC 19143 ||||| || || ||||| | || | | ||| || || |||| || || | ||| Sbjct 864091 CCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCCTCTTTGTCCCCGATC 864150 Query 19144 CATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAAT 19203 || || ||||| | |||| ||| |||||||| ||||||||||| || | || || Sbjct 864151 CAACGCAAGGCCCAGGCTGCCTCCTTCTTTACACAAGGCATTGTCTCCATGGCGTTGAAG 864210 Query 19204 AGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCT 19263 ||| | | || || | |||||||| || | || || | | ||| ||||| || Sbjct 864211 AGAAATTCCCTTTCTTCGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATCTCA 864270 Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323 |||||||| ||||| || | || || || || || ||||| | |||||||| ||||| Sbjct 864271 GAATGAATGTTTTCCATGGTAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGA 864330 Query 19324 ACTTC 19328 ||||| Sbjct 864331 ACTTC 864335 >seq1832 Length=302895 Score = 246 bits (272), Expect = 3e-60 Identities = 625/935 (67%), Gaps = 23/935 (2%) Strand=Plus/Plus Query 18624 ATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATTTTTTGATATTCG 18681 |||||| | ||||||||||| | || || || ||| ||||| || | ||||| || Sbjct 206416 ATCCAAGGTAAAAGAATTCTTTG--TTGGACTTGACATCACTCCTATCCTCTGATACTCA 206473 Query 18682 GCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAATCA 18741 | |||| || ||||||| ||||| || || || | ||| ||| ||||||| ||| Sbjct 206474 CCTCCTCTCTTCTCAAAGAGGTTAGTCTTCCCTTCCAGTGAAATATTCTCCATAAGGTCA 206533 Query 18742 AATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTCTATCCGCT 18801 |||||||||| ||| | | | || | || |||| ||| |||| || || Sbjct 206534 AATGGATTTTCTACTCTGGAAACCTTGCTAAAACCTAGTTCCTGCCTAAGTCAGTCTGCC 206593 Query 18802 ACAAATTTAATATA-TGTGTTCATCATATCACAATTCATTCCTATTAATTTAACAGGTAG 18860 | |||| |||||| || || | | || |||||||| || || | || | || | Sbjct 206594 ATGAATTCAATATACTGCTTTATTAACATG-CAATTCATCCCAATGAGCTTCAGCGGCAA 206652 Query 18861 TGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATACAACTCT 18920 || |||| || || || || ||||| | || || | ||||| | || | | | || Sbjct 206653 GGCCTCTGGGAGGAACTCCTGGTCTATCCTAACGGCTT-TGATA-ATTATTTCCTTCACT 206710 Query 18921 ATCTTCATTAGGAGGGT-ATAGA--AGATGTTTAAACATCAAACATGCAAAATCACAATG 18977 ||| | | | ||| | || || || ||||| ||||||| | ||||| |||| || Sbjct 206711 CTCTGCTCT-GAAGGTTTATGGACCAGGTGTTTGAACATCAGGTAGGCAAAGTCACGGTG 206769 Query 18978 TAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAAT-GTTAAACCAGGCATCAGTCCTC 19036 || ||||| ||||| || || | ||||| ||||| || | ||||||||||| | | Sbjct 206770 TAAACCCTCATCTCTGCTAATAAGCTCATTGGAAAACAGTGAGGCCAGGCATCAGGCTGC 206829 Query 19037 ttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTG 19096 ||| || | |||| |||| | ||| | || ||| ||||| | || ||||| || | Sbjct 206830 ATTTCTTGAGCCAGTATATCAACGCAGAAGAACCAAAAAAGGAGATTCCTTCCGTGGCAG 206889 Query 19097 CAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCC 19156 |||| | || | | ||| || || |||| || || | || ||| | || |||| Sbjct 206890 CAAAGTCCACAACCCATTCCCCGTAGGTAGCCTCTTTGTCCCCAACCCAATGCAAGGCCC 206949 Query 19157 AATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCT 19216 ||| |||||||| || |||| ||||||||||| || | || || ||| | | || Sbjct 206950 AATTTGCCTTCTTCCTTCCACAAGGCATTGTCTCCATGGTGTTGAAGAGAAATTCCCTCT 207009 Query 19217 CATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTT 19276 | | | ||||| | ||| | || | | | ||| |||| || ||||| || |||| Sbjct 207010 CTTTGGAATCTT--ATATAAGTGTCAGTGAGGAGACTACACATCTCAGAATGGATGTTTT 207067 Query 19277 CTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAA 19336 | || || || || || || || ||||| | |||||||| ||||| || || | | Sbjct 207068 CCATGGCAATTTGGAAGCCATAGAAACAGCAGGCTTCTGTCATCTGAACCTCTTGGCCAC 207127 Query 19337 ATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTA------ 19390 | | || ||||| |||||||| ||||| ||| |||| || |||| || || | Sbjct 207128 ACCACTCCACCAAGTTTTCATTTACTATGCCAACACTTGCCACAAAGAAAGCCAGAACGT 207187 Query 19391 ATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTAATATCT 19449 || || ||||||| | | || || | | || | | ||| ||| | | ||| || Sbjct 207188 GAACGTGGGGTATAAAATCTCTCTCCTCAG-GCTTCAGGGATTCCCAGTGCTGAATGTCC 207246 Query 19450 TTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTC 19509 || || | || || |||| | ||||||||||||||||||| ||||| ||| |||| | | Sbjct 207247 TTGGAAAGATTCACCTCTTTAGCTGTCCAAAAAGAAGCCTCAGCTTTCTTACACATCTGC 207306 Query 19510 CATATATCACGATATTGTATAGGAAATATAACAAA 19544 || | |||| |||| | ||||| || || | ||| Sbjct 207307 CAAAGATCATGATACTCCATAGGGAAGATGAGAAA 207341 >seq158 Length=7371824 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||| ||||| || | || ||||| || |||||||| ||| Sbjct 3463986 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCTTT 3463927 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| || |||||||| || |||||||| Sbjct 3463926 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAAGCC 3463867 Query 19105 ACTAGTCTTTCTCC 19118 || | |||||| || Sbjct 3463866 ACAACTCTTTCCCC 3463853 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTC 18731 |||||| || ||||||| ||| ||||||||||| ||||| || ||||| || || || Sbjct 3477012 TTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTCTC 3476953 Query 18732 CATAAAATCAAATGGATTTT 18751 |||||||||||| ||||||| Sbjct 3476952 CATAAAATCAAAGGGATTTT 3476933 >seq148 Length=4816872 Score = 111 bits (122), Expect = 2e-19 Identities = 115/149 (77%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || || || ||| |||||||| Sbjct 2360426 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGACTTGACATCACTCCCATC 2360483 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | ||||| || |||||||| ||||| || || || | ||| ||| Sbjct 2360484 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTC 2360543 Query 18730 TCCATAAAATCAAATGGATTTTTTACATT 18758 |||||||| ||||||||||||| ||| || Sbjct 2360544 TCCATAAAGTCAAATGGATTTTCTACTTT 2360572 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| ||||| || | ||||||||||| || | ||| | Sbjct 2362149 CCTCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGGCCGCGTTTCT 2362208 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| || || ||||||| Sbjct 2362209 TGAGCCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 2362268 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 2362269 CCACAACCCGTTCTCC 2362284 >seq3 Length=9835568 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || |||| || || || ||||| ||||| || || Sbjct 152609 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATGGAC 152668 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||| | ||| ||||||||||| || |||||||| | |||| | ||| || Sbjct 152669 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 152728 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 152729 TTTCTTATACCATA 152742 Score = 95.1 bits (104), Expect = 1e-14 Identities = 125/172 (73%), Gaps = 6/172 (3%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || |||||||||||||| || | ||| ||| |||| || | || || || | Sbjct 150104 TCCAGCCGTAGAAATGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCGATGTGGATGT 150163 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | |||||| || |||||||| || |||||||| ||||||||||| | || ||| Sbjct 150164 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCT---TAAGAACGG 150220 Query 47170 TT---TGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 || |||| || ||||| || || ||||||| ||| || | ||| || || Sbjct 150221 TTTTCTGTGAAATTTCCCACACGGTCTTATAAAGTTGCTTCAGGTCATCAGG 150272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562081446380520