Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1020 210 3e-49 seq417 150 2e-31 seq1832 120 4e-22 seq158 114 2e-20 seq148 93.3 5e-14 >seq1020 Length=850931 Score = 210 bits (232), Expect = 3e-49 Identities = 332/473 (70%), Gaps = 2/473 (0%) Strand=Plus/Minus Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222 ||| |||| | || ||||| ||||| |||||||| |||||||| || | | |||||| Sbjct 338772 TTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAGTAAGTTCATT 338713 Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282 ||||||| | || ||||| | || | ||| || | ||| ||||| | ||||||||| Sbjct 338712 GGAAAAGGCGAGGCCAGGCATCAGGCCACGTTTCTTGAGCCAGAATATCGATGCAAAAGA 338653 Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA 37342 |||||||||| || ||||| || || ||||| || |||| ||| ||| | || Sbjct 338652 ACCAGAAAAGAGGATTCCTTCCACAGCAGCAAAAGCCACAACCCGTTCCCCGTAGGTACC 338593 Query 37343 ACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGT 37402 | || | |||| | | |||||||||||| || ||||| ||||| Sbjct 338592 CTCTTTGTCCCCAGTCCAATGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGT 338533 Query 37403 TTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAG 37462 || || || || |||||||| | |||||| |||| | |||||||| ||| | || Sbjct 338532 CTCGATGGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATATAAGTGTCAGTGAG 338473 Query 37463 TAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCT 37522 | ||| ||||| ||||| || || ||||| || || | || || |||| ||||| | Sbjct 338472 GAGACTGTACATCTCAGAATGGATGTTTTCCATGGCAAATTGGAAGTCATAGAAACAGCG 338413 Query 37523 AGCTTCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCC 37581 ||||| | |||| ||||| || | ||||| || | ||||||||||| || || | Sbjct 338412 GGCTTCTG-TAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACGATGC 338354 Query 37582 CATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA 37634 ||||||| |||||||||||||| ||||| | |||||| | ||| || ||| Sbjct 338353 CATCACTCGCTGCAAAGAAAGCCAGAACGTGGGATATAAAGTATCTCTCCTCA 338301 >seq417 Length=2207251 Score = 150 bits (166), Expect = 2e-31 Identities = 264/382 (69%), Gaps = 2/382 (1%) Strand=Plus/Plus Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222 ||| |||| | || ||||| ||||| |||||||| |||||||| || || | |||||| Sbjct 863955 TTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATT 864014 Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282 ||||| || | || ||||| | | | ||| || | ||| ||||| | ||||||| Sbjct 864015 GGAAAACGTGAGGCCAGGCATCAGGCTGCGTTTCTTGAGCCAGAATATCGACTCAAAAGA 864074 Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA 37342 ||||||||||| || ||||| || || ||||| | |||| ||| ||| | || | Sbjct 864075 ACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGC 864134 Query 37343 ACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGT 37402 | || ||||| | ||| |||||| || ||||| ||||| Sbjct 864135 CTCTTTGTCCCCGATCCAACGCAAGGCCCAGGCTGCCTCCTTCTTTACACAAGGCATTGT 864194 Query 37403 TTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAG 37462 || || || || |||||||| | ||||||| |||| | || ||||| ||||| || Sbjct 864195 CTCCATGGCGTTGAAGAGAAATTCCCTTTCTTCGGAATCTTTAATGTAAGTGTCAATGAG 864254 Query 37463 TAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCT 37522 | ||||||||| ||||| ||||| ||||| || | || || || ||||| ||||| | Sbjct 864255 GAGACTATACATCTCAGAATGAATGTTTTCCATGGTAATTTGGAAGCCATAGAAACAGCG 864314 Query 37523 AGCTTCAGATAAT-TGAACATC 37543 ||||| | |||| ||||| || Sbjct 864315 GGCTTCTG-TAATCTGAACTTC 864335 >seq1832 Length=302895 Score = 120 bits (132), Expect = 4e-22 Identities = 287/432 (66%), Gaps = 3/432 (1%) Strand=Plus/Plus Query 37179 GCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAG-GTTAATCC 37237 ||||| |||| |||||||| |||||||| || || | ||||| ||||| || | || Sbjct 206756 GCAAAGTCACGGTGTAAACCCTCATCTCTGCTAATAAGCTCATTGGAAAACAGTGAGGCC 206815 Query 37238 TGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAAT 37297 ||||| | | | ||| || | ||| |||| ||| |||| ||| ||||| | || Sbjct 206816 AGGCATCAGGCTGCATTTCTTGAGCCAGTATATCAACGCAGAAGAACCAAAAAAGGAGAT 206875 Query 37298 ACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAAT 37357 ||||| || ||||| | |||| | | ||| | || | | || || Sbjct 206876 TCCTTCCGTGGCAGCAAAGTCCACAACCCATTCCCCGTAGGTAGCCTCTTTGTCCCCAAC 206935 Query 37358 CCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAA 37417 ||| | | ||||| |||||| | |||| ||||| || || | || || Sbjct 206936 CCAATGCAAGGCCCAATTTGCCTTCTTCCTTCCACAAGGCATTGTCTCCATGGTGTTGAA 206995 Query 37418 GAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTC 37477 |||||| | | |||| |||| ||||||||| ||| | || | |||| |||| || Sbjct 206996 GAGAAATTCCCTCTCTTTGGAATCT--TATATAAGTGTCAGTGAGGAGACTACACATCTC 207053 Query 37478 AGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTG 37537 ||| || || ||||| || || || || || ||||| ||||| | ||||| | | || Sbjct 207054 AGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGGCTTCTGTCATCTG 207113 Query 37538 AACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAA 37597 ||| || | | ||| || | ||||||||||| ||||| ||| |||| || |||| Sbjct 207114 AACCTCTTGGCCACACCACTCCACCAAGTTTTCATTTACTATGCCAACACTTGCCACAAA 207173 Query 37598 GAAAGCAAGAAC 37609 |||||| ||||| Sbjct 207174 GAAAGCCAGAAC 207185 >seq158 Length=7371824 Score = 114 bits (126), Expect = 2e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||| ||||| | ||||||||| | Sbjct 3463988 CTTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCT 3463929 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| | Sbjct 3463928 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAAG 3463869 Query 37318 CTACAA 37323 | |||| Sbjct 3463868 CCACAA 3463863 >seq148 Length=4816872 Score = 93.3 bits (102), Expect = 5e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||| |||||||| | || ||||| | || | ||| || Sbjct 2362151 TCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGGCCGCGTTTCTTG 2362210 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| | |||||||| ||||||||||| || ||||| || || ||||| || Sbjct 2362211 AGCCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCC 2362270 Query 37320 ACAA 37323 |||| Sbjct 2362271 ACAA 2362274 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || ||||| |||| Sbjct 2360471 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCTT 2360529 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| ||||||||||| Sbjct 2360530 CCAGTGAAATATTCTCCATAAAGTCAAATGGATT 2360563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592287976383720