Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013
-01-16] 3,893 sequences; 2,400,150,193 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq29 122 7e-23
seq1198 109 4e-19
seq949 107 2e-18
seq340 98.7 8e-16
seq1114 89.7 4e-13
>seq29
Length=5782310
Score = 122 bits (134), Expect = 7e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317
|| || | |||||| || ||||| ||||| || ||||| || | | || ||||
Sbjct 156622 AACACAAGATGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGACAATGTGTGTCCATCT 156563
Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377
||||||||||| || ||||| |||| | ||| ||||| || ||||| ||||| ||||
Sbjct 156562 TCCAATTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATTC 156503
Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437
||||| || |||||| |||||| || || || ||||| || || ||||||| ||
Sbjct 156502 TGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGTTTCAACCTCGAGAGTGATGGTC 156443
Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || || | ||||| || || ||||||||
Sbjct 156442 TTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 156411
>seq1198
Length=804178
Score = 109 bits (120), Expect = 4e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| ||||| | ||| | ||| | || || || || ||||| || ||||||||||| |
Sbjct 573939 CCACCTCTCAGACGGAGAACCAGGTGGAGAGTTGACTCTTTCTGGATATTGTAATCAGAA 573880
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| ||| | | |||| |||| ||||| || ||||| || | | ||| || || || ||
Sbjct 573879 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGGG 573820
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
||||| ||||||||||| || || || || |||| |||||| | |||||
Sbjct 573819 ATGCCCTCTTTATCTTGGATCTTCGCCTTCACGTTTTCAGTGGTGTCACTGGGCTCCACC 573760
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| || |||| || |||||||||| || || || || |||||||||
Sbjct 573759 TCCAGGGTGATGGTCTTGCCGGTTAGGGTCTTCACGAAGATCTGCATG 573712
>seq949
Length=596474
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| || || | ||| | ||| | || || || || ||||| || || |||||||| |
Sbjct 262154 CCACCCCTGAGACGGAGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAA 262213
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| ||| | | |||| |||| ||||| || ||||| || | | ||| || || || ||
Sbjct 262214 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGGG 262273
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
||||| ||||||||||| || || || ||| |||| | |||||| | |||||
Sbjct 262274 ATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 262333
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || |||| || |||||||| | || || ||||| ||||||||
Sbjct 262334 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 262380
>seq340
Length=3380363
Score = 98.7 bits (108), Expect = 8e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| || || | ||| | ||| | || || || || |||| || || |||||||| |
Sbjct 3005154 CCACCCCTCAGACGGAGAACCAGGTGCAGAGTTGACCCTTTCTGGATGTTGTAATCAGAA 3005095
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGG-GCGG 101361
| ||| | |||| |||| ||||| |||||||| || | | ||| || || | | ||
Sbjct 3005094 A-AGTAAGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGAGGGG 3005036
Query 101362 AATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCAC 101421
| |||||||||||||||| || || || ||| | | | |||| | | ||||||
Sbjct 3005035 ATTGCCTTCTTTATCTTGGATCTTAGCCTTCACATTCTTGATGGTGTTACTGGATTCCAC 3004976
Query 101422 TTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| ||||||| || |||||||| | ||| || ||||| ||||||||
Sbjct 3004975 CTCCAGAGTGATAGTCTTGCCGGTCAGAGTCTTCACAAAAATCTGCAT 3004928
>seq1114
Length=1661397
Score = 89.7 bits (98), Expect = 4e-13
Identities = 150/217 (69%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| | ||| | || || || || ||||| || || |||||||| | | ||| | | |
Sbjct 1502913 ACGGAGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCC 1502972
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373
||| |||| ||||| || ||||| || | | ||| || || || || ||||| |||||
Sbjct 1502973 ATCTTCCAGCTGCTTGCCAGCAAAGATAAGTCTCTGCTGGTCAGGGGGGATGCCCTCTTT 1503032
Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433
|||||| || || || || |||| || ||| | ||||| || || ||||
Sbjct 1503033 ATCTTGGATCTTCGCCTTCACGTTTTCAGTGGTATCACTGGGCTCCACCTCCAGGGTGAT 1503092
Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| |||||||| | || || || || |||||||||
Sbjct 1503093 GGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 1503129
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396259598199801
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |