Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq92 170 4e-37 seq1020 159 6e-34 seq218 141 2e-28 seq417 138 2e-27 seq3 91.5 3e-13 >seq92 Length=3695878 Score = 170 bits (188), Expect = 4e-37 Identities = 186/245 (76%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 241385 AGCTGCTGACAGCCTTGGC--ACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCT 241442 ||| |||| ||||| | || ||||| | || ||||| ||||||||| |||||||||| Sbjct 2312493 AGCAGCTGGCAGCCGTTGCTGACATGGGTCAT--GACCTTCTGTTTGAGCTGGGCCACCT 2312436 Query 241443 GGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCA 241502 | ||||| || | || || | ||||| || ||||| || | |||||| ||||| Sbjct 2312435 GCTCCCGGAGGAGCCCAGCAGTGCTCGACAGCCCCGCGTTCTCGGCCTTGAGTGTCTTCA 2312376 Query 241503 CTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCA 241562 | || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 2312375 CCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCA 2312316 Query 241563 AGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCG 241622 |||||||| || | ||| || ||| | |||||||| |||||||| ||||| | ||| | Sbjct 2312315 GCCGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATATTGATGG 2312256 Query 241623 GAGAC 241627 | ||| Sbjct 2312255 GGGAC 2312251 >seq1020 Length=850931 Score = 159 bits (176), Expect = 6e-34 Identities = 484/737 (66%), Gaps = 22/737 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || ||||| ||||||||| || |||||||| |||| || || ||||| Sbjct 339045 CTGATATTCGCCTACTCTCTTCTCAAAG---TTAGTCTTCCCTTCCAGTGAAATATTCTC 338989 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTAT-ACACCCGTGTCAGGCCCATCTGTTCCAGCA 47957 ||| ||| || || || | | | | | | || || || || | ||||||| Sbjct 338988 CATAAAGTCAAATGGATTT--TCTACTCTGAAAACCTTGCCAAAACCTA--GCTCCAGCA 338933 Query 47958 G--GT-GATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGA 48014 || | || || ||| |||| || || | ||| | ||| ||||| || |||| Sbjct 338932 TAAGTCGGTCTGCCACGAACTCAATATACTGCTTCATTAATGTGCAATTCATCCCAATGA 338873 Query 48015 GGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAA 48074 | ||| ||||| |||| ||||| ||||||| ||||||| | ||||| | | | Sbjct 338872 GCTTCACAGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCGAACGGCATTAATAATTA 338813 Query 48075 TCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 | | ||| || | ||| || ||||||| | |||||| ||| | | || ||||| Sbjct 338812 TTTCCTTCACTCTCTGCTCGGAAGGTTTGTGGACCAGGTGTTTGA---ACATCAGGCAGG 338756 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 ||||||| | ||| || || || || | ||| | || | ||||| ||| ||| |||| Sbjct 338755 CAAAGTCACAGTGTAAACCCTCATCTCTGCTAGTAAGTTCATTGGAAAAGGCGAGGCCAG 338696 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||| | || | | ||||||||||| || | || ||||| ||||| |||| ||| | Sbjct 338695 GCATCAGGCCACGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAGGATTC 338636 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGT-CTGAGATC 48313 | ||||| || || || || | || || ||| | | | | | |||| | || | Sbjct 338635 CTTCCACAGCAGCAAAAGCCACAACCCGTTCCCCGTAGGTACCCTCTTTGTCCCCAGTCC 338576 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373 | | ||| ||||| |||||||||||||| | || ||||| ||||| ||||| |||| Sbjct 338575 AATGCAAG-GCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCGATGGCGTTGAAG 338517 Query 48374 AGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATC 48430 || | | || | || || ||| || |||||| || | ||||||| Sbjct 338516 AGAAATTCCCTTTCTTTGGAATCTTTAATATAAGTGTCAGTGAGGAGACT---GTACATC 338460 Query 48431 TCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACC 48490 ||||| || | || || || || | ||||| | ||||| | ||| || | | Sbjct 338459 TCAGAATGGATGTTTTCCATGGCAAATTGGAAGTCATAGAAACAGCGGGCTTCTGTAATC 338400 Query 48491 TGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCA 48550 || |||||| | || | ||||| || || ||||| || || ||||| || ||| Sbjct 338399 TGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACGATGCCATCACTCGCTGCA 338340 Query 48551 AAGAAGGCAAGGACATG 48567 ||||| || || || || Sbjct 338339 AAGAAAGCCAGAACGTG 338323 >seq218 Length=3215786 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| ||| ||||| || |||||||| || ||||| | | ||| || | ||| Sbjct 1624409 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCTGTGGACGCCAGC 1624468 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||||||| ||||||||||||||| || |||| |||||| ||||| Sbjct 1624469 TCCGTGTTCTGGCTCTTGAGCGTCTTCACTTTCTCCTCGAGGCGCGAGATGCGCTCCAGC 1624528 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| || | ||| || | |||||| || || | ||| || |||||||| Sbjct 1624529 TTGCGCTTGCGGCACTTAGAGGCAGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTA 1624588 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 1624589 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 1624621 >seq417 Length=2207251 Score = 138 bits (152), Expect = 2e-27 Identities = 360/541 (67%), Gaps = 11/541 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || ||||| ||| |||||||||| |||||||| |||| || || ||||| Sbjct 863679 CTGATACTCGCCTACTCTCTTCACAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 863738 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||| || || || || | | | | || || || || | ||||||| Sbjct 863739 CATATAGTCAAATGGATTTTCTAC-TCCGAAAACCTTGCCAAAACCTA--GCTCCAGCAT 863795 Query 47959 --GT-GATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG 48015 || | || || ||| |||| || || | ||| | || ||||| || |||| Sbjct 863796 AAGTCGGTCTGCCACGAACTCAATATACTGCTTCATTAACATGCAATTCATCCCAATGAA 863855 Query 48016 GGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075 || |||||| |||| ||| || ||| ||||||||| ||||| | | || Sbjct 863856 CTTCATGGGCAAGGCCTCCTTGATGAATCCCTGCTCTATCTGAACGGCATTAATAATTAT 863915 Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 | ||| || | ||| || ||||||| | |||||| ||| | | || |||||| Sbjct 863916 TTCCTTCACTCCCTGCTCGGAAGGTTTGTGGACCAGGTGTTTGA---ACATCAGGCAGGC 863972 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 |||||| | ||| || || || || | ||| || || | ||||| || ||| ||||| Sbjct 863973 AAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGG 864032 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||| | | | | ||||||||||| || | | | ||||| ||||| |||||||| || Sbjct 864033 CATCAGGCTGCGTTTCTTGAGCCAGAATATCGACTCAAAAGAACCAGAAAAGAAGATTCC 864092 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC- 48314 ||||| || || || | | || || ||| | | ||| | ||||| ||||| Sbjct 864093 TTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCCTCTTTGTCCCCGATCCA 864152 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 | | ||| |||||| |||||| |||||| | || ||||| ||||| ||||| ||||| Sbjct 864153 ACGCAAG-GCCCAGGCTGCCTCCTTCTTTACACAAGGCATTGTCTCCATGGCGTTGAAGA 864211 Query 48375 G 48375 | Sbjct 864212 G 864212 >seq3 Length=9835568 Score = 91.5 bits (100), Expect = 3e-13 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||| | || || |||||||||||||||||| ||| || ||||||||||| ||| Sbjct 160802 GTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTGG 160861 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| || || | || ||||| |||||||||||||| |||| || |||||| ||| Sbjct 160862 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 160920 Query 213647 GGAC 213650 ||| Sbjct 160921 AGAC 160924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931487469285120