Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq58 307 1e-78 seq2 194 2e-44 seq3025 107 2e-18 >seq58 Length=5701780 Score = 307 bits (340), Expect = 1e-78 Identities = 665/986 (67%), Gaps = 13/986 (1%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| || | ||||| ||| ||| || || || || Sbjct 3157016 CAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCCGTGTCAAACTTGTTGGC 3157075 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| || | || ||||||| || ||| || | ||||||||||| || Sbjct 3157076 AAACAAGTGGTGC---TTGCGGAGCATCCAGTTCAAGTCCCCTGCTCCGAACACGCACAC 3157132 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||||| | || || || |||| || ||||| | || || || | || || || || Sbjct 3157133 AGAACGCACATGGACCCCACTGCAGGGTGGGTAGGGGGCACCCTTGGAAACATCCCCCTC 3157192 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 | |||||||||| || |||||||| || || || |||||||| || |||| || || | Sbjct 3157193 GAAGTACTGCCATTTGACAAACCTTGCAATTGCATGCATGTCAGACATGTCATACTTCTG 3157252 Query 160292 -CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTT 160350 | | ||| || | |||||| | ||| || | ||| | |||||||| || | | Sbjct 3157253 GCTTAAGGACAATGAGCCCGGGACATCAGGG-ATCCTCTGAATAGTGGCCCAGAGATACT 3157311 Query 160351 CGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCA 160410 | || |||||||| || || |||| ||| ||||| |||| | |||| | | | Sbjct 3157312 CATCTGGGCTGTATGTATCTTTAGCCCACTCCATAAACTTTTGGATTTTTTCATTCTCTA 3157371 Query 160411 GAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTA 160470 | || | || || || | || ||||| || || ||||| || || | ||| Sbjct 3157372 GCACATACCCCACATACATCCTACTGACCACAAAATAGGCACTGCCTGAAAACAGGGGTG 3157431 Query 160471 TGGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGC 160529 | | ||| || ||| ||| ||| || ||||| | || | || || || | Sbjct 3157432 TTTCGAGAGGAGG-GTGCATTTTGTCAGTCCCTGTGTTCGTCAGCTTCCCATTAACAACT 3157490 Query 160530 GCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTG 160589 | | |||| |||||||| | | || | | |||||| | || || ||||| || Sbjct 3157491 GTATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTCTCTCAGTTTCTAGGTTG 3157550 Query 160590 TTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAG 160649 || |||| ||||| || |||| | ||| || || | ||| || || | ||||| Sbjct 3157551 TTTTCACCCATTAGCGACTTGAGCTTCCGGACAATTTCCAAGTTGGTTTTAATGGGAAAA 3157610 Query 160650 TCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTC 160709 || ||||||| | ||||||| ||||||||| | || |||| || ||||| | Sbjct 3157611 TCCATACCGCAAAGATTTATCAAGTACTTCCAGTCTGCACTCATCCTGTAGAGGTCTTGC 3157670 Query 160710 ATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTA 160769 ||||| || | || ||||| || || ||||| || || ||||| || |||| || | | Sbjct 3157671 ATGCAGTTGAGGTCGGCCTGAACCCGACTCCACGAGGCATACACCACACTCTCCAGCTGA 3157730 Query 160770 CTGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAGAAAGAAC 160826 |||||||||||||| ||| ||| || || |||| || |||| | |||| |||| | Sbjct 3157731 CTGGCCACAAAGACATTACTGAAGCAGGATGCGATGCCGATCACCGCGGCCAAAAAGGA- 3157789 Query 160827 ATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCC 160886 ||| || | ||||| ||||||||| | ||| || | ||||||||| || ||||| Sbjct 3157790 ATC--CTCTGACTTTCTGTCCACGTGAATGCAGTAGAAATTCTGAGGCATATAAATGGCT 3157847 Query 160887 CTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGA 160946 || || | ||| || | ||| || || || ||||| | ||| ||||| || ||||| ||| Sbjct 3157848 CTCAGGAGCCTGTCAAGCATTTCGATTTTGTGATGAACCACTATAGAATATGCTATGGGA 3157907 Query 160947 AACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAA 161006 || || ||| || ||| |||| | | || | ||| ||||||| ||| || Sbjct 3157908 AATTCTTCCTCTTCTTTACTAAGGGGTTGCATGATATATCTACGCCTCTTGATGAAAGAA 3157967 Query 161007 TCACAATCCCGCGTCATGTTGATATA 161032 | |||||| | |||||||| ||||| Sbjct 3157968 TTACAATCTCTGGTCATGTTTATATA 3157993 >seq2 Length=17817800 Score = 194 bits (214), Expect = 2e-44 Identities = 231/312 (74%), Gaps = 6/312 (2%) Strand=Plus/Plus Query 168161 GCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATGAAGCAGCC 168220 ||| | | |||| || ||||| || || || || || |||||||||||| || | || || Sbjct 454756 GCAGGCTGTTCCCGAGATCTTCCCAGAACCAAAAGTATTGAAGAGGCACTTGTAACACCC 454815 Query 168221 TTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCCAACTGCGT 168280 ||| ||||||| |||||| ||||| || || | |||||||| ||| ||| ||| || Sbjct 454816 TTCATCCTCCAGGGTGGTGTTCCAGAAGGTAATGGTTGAGTTCTTGAGTTCCAGCTGGGT 454875 Query 168281 TATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCGCTGAAGGT 168340 ||||| | ||||||||| ||| || || ||||| || ||||||| ||||||||| Sbjct 454876 GATGTTTATCTTGCCTTTATAAGCAGGCTGGACCACAACCCCATGGTTCTTGCTGAAGGT 454935 Query 168341 GGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGAACCTCTTT 168400 | ||||||| || ||||| ||||| || |||||||| || || |||| | ||| Sbjct 454936 GACCATGTTTTCTGGGCTAACAGCCTTGATTTTCTGCCATGTCACAATCAAGA---CTTC 454992 Query 168401 ATCGG---TCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGCTCATC 168457 |||| | ||||| || ||||| | ||||| || ||||||||||||||| |||| Sbjct 454993 CTCGGAATTTTGCAGAGAGCATCTTAAGGAAGCAGGCGTGTTCAGCAGTTCTTTTTCATT 455052 Query 168458 TTGAGTTACGAC 168469 ||| || ||||| Sbjct 455053 TTGGGTCACGAC 455064 Score = 86.0 bits (94), Expect = 7e-12 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 167931 ACCTCTCCGTTTCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTT 167990 ||| || | || || || |||| ||| || ||||| || || | || ||| || ||| Sbjct 452237 ACCACTTCCTTCCCCACCTGACGCTTGGGGTCTTTGACCTGGAGAACGCTCGTGACAGAC 452296 Query 167991 GTAGTTCCATTGCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACC 168050 || || |||||| | || || | | || ||||| ||||||||||| || | ||| Sbjct 452297 GTGGTCCCATTGGGGTGCAAGAGAACCTCAGTACTGTTTTCAATCCCTGACCCAGACACT 452356 Query 168051 TTCCAGAATATTACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTAAGC 168105 |||||| | || ||||| || || || || | |||||||| || ||||||| || Sbjct 452357 TTCCAGGAGATCACAGGGGCTGGGCGGGCATTGGCAGAGCAAGTGATATTTAGGC 452411 >seq3025 Length=103863 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||| || |||| |||| || |||| |||||| | ||||| || |||| | || | Sbjct 83661 AGATACTTGGCTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCT 83720 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || || |||||||||| || || || || | ||| | ||||| | | ||| Sbjct 83721 GGAATATAATTCTCATAATTTTCCCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCT 83780 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 | || | ||||| |||||||| |||||| || |||| |||||||||||||||| Sbjct 83781 AGAAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAAGAA 83840 Query 176412 AAATAGAACTTACA 176425 | ||| || || || Sbjct 83841 AGATAAAATTTGCA 83854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577191111070680