Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq395 127 4e-24 seq29 125 1e-23 seq530 123 5e-23 seq786 120 6e-22 seq59 118 2e-21 seq75 114 3e-20 seq1198 91.5 3e-13 seq949 91.5 3e-13 seq340 87.8 4e-12 >seq395 Length=2662522 Score = 127 bits (140), Expect = 4e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||| | ||| ||| || || || || |||| Sbjct 955163 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAG 955221 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| ||| || |||| ||||| | |||||| |||||||| | Sbjct 955222 ACAAAGTGCGTCCATCTTCCAGTTGCTTGCCAGGCAAGATCAGTCTCTGCTGATCAGGAG 955281 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | ||||||||||||| || || || |||||||| ||| | ||| || | ||| | Sbjct 955282 GAATTCCTTCTTTATTATGAATCTTGGCCTTTACATTTTCTATTGTATCCGAAGGTTCAA 955341 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || ||||||||||| || || || | ||||| | || |||||||| || Sbjct 955342 CCTCGAGAGTAATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 955393 >seq29 Length=5782310 Score = 125 bits (138), Expect = 1e-23 Identities = 145/194 (75%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || || ||||| ||||| || |||| |||||||| || |||||||||| Sbjct 156599 CTTTTGA-ATGTTGTAGTCAGACAATGTGTGTCCATCTTCCAATTGCTTGCCAGCAAAGA 156541 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | |||||| |||||||| || |||||||| |||| || || || |||||||| Sbjct 156540 TCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATTCTGAATCTTGGCCTTTACATTTT 156481 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 ||| | ||| || | ||| || || ||||| ||||| || || || | ||||| | | Sbjct 156480 CTATTGTATCCGAGGTTTCAACCTCGAGAGTGATGGTCTTCCCTGTAAGGGTTTTCACGA 156421 Query 192527 ATATCTGCATTTTA 192540 | |||||||| ||| Sbjct 156420 AAATCTGCATCTTA 156407 >seq530 Length=2118653 Score = 123 bits (136), Expect = 5e-23 Identities = 169/233 (73%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 192308 TACCACCTCTAAGACGT---AATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAA 192363 || |||||| | || || || || | ||| | ||| | ||| ||| || || || || Sbjct 63781 TAGCACCTCCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAG 63839 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 ||||| || || ||| |||| |||| ||| || ||||||||||| | |||||| |||||| Sbjct 63840 TCAGACAAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCA 63899 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 || | |||||||| ||||| || || || |||||||| ||| | ||| || | | Sbjct 63900 GGAGAAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGT 63959 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| ||||| || || || | ||||| | || |||||||| Sbjct 63960 TCAACCTCGAGAGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 64012 >seq786 Length=1074229 Score = 120 bits (132), Expect = 6e-22 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||| | ||| ||| || || || || |||| Sbjct 712512 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAG 712570 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || || |||| |||| ||| || |||||||||||| ||||||| |||||||| | Sbjct 712571 ACAAAGTAGGTCCATCTTCCAGTTGCTTGCCAGCAAAGATTGATCTCTGCTGATCAGGAG 712630 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | ||||||| ||||| || || | |||||||| ||| | ||| || | ||| Sbjct 712631 GAATTCCTTACTTATCGTGAATCTCGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAG 712690 Query 192488 CTTCTAGAGTAATGGT-TTTACCAGTTAATGTTTTAATAAATATCTGCA 192535 | |||||||| ||||| ||| ||| | | ||||| || || ||||||| Sbjct 712691 CCTCTAGAGTGATGGTCTTTTCCA-TAAGGGTTTTCATGAAAATCTGCA 712738 >seq59 Length=2579055 Score = 118 bits (130), Expect = 2e-21 Identities = 164/227 (72%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 192311 CACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGAT 192369 |||| | ||| | || || | ||| | ||| | ||| ||| || || || || ||||| Sbjct 1130453 CACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGAC 1130511 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || || ||| |||| |||| ||| || ||||||||||| | |||||| |||||||| || Sbjct 1130512 AAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 1130571 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 |||||||| ||||| || || || |||||||| ||| | ||| || ||| || Sbjct 1130572 ATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGCGTTCAACC 1130631 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | ||||| ||||| || || || | ||||| | || |||||||| Sbjct 1130632 GCGAGAGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 1130678 >seq75 Length=4930459 Score = 114 bits (126), Expect = 3e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | ||| || | ||| | ||| | ||| ||| || || || || |||| Sbjct 2283650 ACCACCACGAAGTCTTAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAG 2283708 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| ||| ||| || ||||||||||| || ||||| |||| ||| | Sbjct 2283709 ACAAAGTGCGTCCATCTCCCAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGATGAGGAG 2283768 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| || | ||| || | ||| Sbjct 2283769 GAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTAGTGTATCCGAGGGTTCAG 2283828 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | | ||||| ||||| || || || | ||||| | || |||||||| || Sbjct 2283829 CCTTGAGAGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 2283880 >seq1198 Length=804178 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 |||||||| ||||| | || | || | ||| | |||||| |||||| |||||||| Sbjct 573939 CCACCTCTCAGACGGAGAACCAGGTGGAGAGTTGACTCTTTCTGGATATTGTAATCAGAA 573880 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || |||| |||| || || ||||||||||| | ||||| || ||||| || Sbjct 573879 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGGG 573820 Query 192430 ATTCCTTCTTTATCTTGTATTTT 192452 || || ||||||||||| || || Sbjct 573819 ATGCCCTCTTTATCTTGGATCTT 573797 >seq949 Length=596474 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| || ||||| | || | || | ||| | |||||| ||| || |||||||| Sbjct 262154 CCACCCCTGAGACGGAGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAA 262213 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || |||| |||| || || ||||||||||| | ||||| || ||||| || Sbjct 262214 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGGG 262273 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || || ||||||||||| || || || ||||| || | || | || || Sbjct 262274 ATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 262333 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || ||||| || || || | || || | ||| ||||||||||| Sbjct 262334 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTT 262383 >seq340 Length=3380363 Score = 87.8 bits (96), Expect = 4e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| || ||||| | || | || | ||| | | |||| ||| || |||||||| Sbjct 3005154 CCACCCCTCAGACGGAGAACCAGGTGCAGAGTTGACCCTTTCTGGATGTTGTAATCAGAA 3005095 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || || | |||| |||| || || || |||||||| | ||||| || |||| || Sbjct 3005094 AA-GTAAGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGAGGGG 3005036 Query 192430 ATT-CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAAT--CTGACGATTCT 192486 ||| |||||||||||||| || ||| || ||||| | || | | ||| ||||| Sbjct 3005035 ATTGCCTTCTTTATCTTGGATCTTAGCCTTCACATTCTTGATGGTGTTACTG--GATTCC 3004978 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| || || || || || | || || | ||| |||||||| Sbjct 3004977 ACCTCCAGAGTGATAGTCTTGCCGGTCAGAGTCTTCACAAAAATCTGCAT 3004928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984430895060550