Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq33 86.0 5e-12 seq395 84.2 2e-11 seq59 82.4 6e-11 seq47 82.4 6e-11 seq29 82.4 6e-11 >seq33 Length=6086033 Score = 86.0 bits (94), Expect = 5e-12 Identities = 120/168 (71%), Gaps = 8/168 (5%) Strand=Plus/Minus Query 107631 GTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTAT 107690 ||||| ||||||| ||||| ||||| | || |||||||||||||| || | | Sbjct 2214920 GTAAAGGCAAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGACTGATATTT 2214861 Query 107691 GCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACTACAACATTCAAAAGGA 107746 || || || || ||||| |||||| || || | |||||||||||||||||||| Sbjct 2214860 GCTGGCAAGCAACTGGAAGATGGACGC----ACTTTGTCTGACTACAACATTCAAAAGGA 2214805 Query 107747 GTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAAA 107794 ||| || | || | ||||||||| | || || || ||| ||||| Sbjct 2214804 GTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTGCTAAGAAAAA 2214757 >seq395 Length=2662522 Score = 84.2 bits (92), Expect = 2e-11 Identities = 166/245 (68%), Gaps = 8/245 (3%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| ||||| || ||||| | || || || |||||||| |||| || || Sbjct 955393 AAGATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATTACTCTCGAGGTTGAACCT 955334 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||||| | | | ||||| |||||| |||||||||| | || ||| Sbjct 955333 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCATAATAAAGAAGGAATTCCTCCTGAT 955274 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGA 107728 ||||||||||| || | | || || || ||||| |||||| || || | || Sbjct 955273 CAGCAGAGACTGATCTTGCCTGGCAAGCAACTGGAAGATGGACGC----ACTTTGTCTGA 955218 Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAA 107788 ||||||||||||||||||||| || | || | ||||||||| | || || || ||| Sbjct 955217 CTACAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTGCTAA 955158 Query 107789 TAAAA 107793 |||| Sbjct 955157 GAAAA 955153 >seq59 Length=2579055 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/232 (69%), Gaps = 16/232 (7%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGG----AGGC 107611 ||||| ||||| || ||||| | || || || ||||| || ||| ||| | || Sbjct 1130678 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCG---CGGTTGAACGC 1130622 Query 107612 TGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGA 107671 | | ||||| | | | ||||| |||||| ||||| ||||| | || || Sbjct 1130621 TCG-GATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGA 1130563 Query 107672 TCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGG 107727 |||||||||||| || | ||| || || || ||||| |||||| || || | | Sbjct 1130562 TCAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGC----ACTTTGTCTG 1130507 Query 107728 ACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGG 107779 |||||||||||||||||||||| || | || | ||||||||| | || || Sbjct 1130506 ACTACAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGG 1130455 >seq47 Length=4803410 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || ||||| || || || || || || ||||| ||| | || |||| | | Sbjct 4290092 AATGCAGATCTTTGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 4290033 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | || || ||||| || ||||| ||| | ||| || || Sbjct 4290032 TGACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAAGAGGGCATCCCCCCTGACCA 4289973 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | ||| || || ||||||||||||| || || | |||||||| Sbjct 4289972 GCAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAGGACGGGCGCACCCTGTCTGACTACAA 4289913 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || |||||||| || ||||| |||| Sbjct 4289912 CATCCAGAAGGAGTCCACTCTGCACCTGGT 4289883 >seq29 Length=5782310 Score = 82.4 bits (90), Expect = 6e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 107552 TAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGC 107611 ||| ||||| ||||| || ||||| | ||||| || ||||| || |||| || | Sbjct 156407 TAAGATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACTCTCGAGGTTGAAAC 156466 Query 107612 TGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGA 107671 ||||| | | | ||||| |||||| |||| ||||| | || || Sbjct 156467 CTCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGAATAAGGAAGGAATTCCTCCTGA 156526 Query 107672 TCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTA 107731 |||||||||||| || | ||| || || || |||| || | | ||| || | ||||| Sbjct 156527 TCAGCAGAGACTGATCTTTGCTGGCAAGCAATTGGAAGATGGACACACATTGTCTGACTA 156586 Query 107732 CAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGA 107771 ||||||||||||||| || || | || | ||||||||| Sbjct 156587 CAACATTCAAAAGGAATCCACTCTTCATCTTGTGTTGAGA 156626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398857874916277