Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013
-01-16] 3,893 sequences; 2,400,150,193 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq33 86.0 5e-12
seq395 84.2 2e-11
seq59 82.4 6e-11
seq47 82.4 6e-11
seq29 82.4 6e-11
>seq33
Length=6086033
Score = 86.0 bits (94), Expect = 5e-12
Identities = 120/168 (71%), Gaps = 8/168 (5%)
Strand=Plus/Minus
Query 107631 GTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTAT 107690
||||| ||||||| ||||| ||||| | || |||||||||||||| || | |
Sbjct 2214920 GTAAAGGCAAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGACTGATATTT 2214861
Query 107691 GCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACTACAACATTCAAAAGGA 107746
|| || || || ||||| |||||| || || | ||||||||||||||||||||
Sbjct 2214860 GCTGGCAAGCAACTGGAAGATGGACGC----ACTTTGTCTGACTACAACATTCAAAAGGA 2214805
Query 107747 GTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAAA 107794
||| || | || | ||||||||| | || || || ||| |||||
Sbjct 2214804 GTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTGCTAAGAAAAA 2214757
>seq395
Length=2662522
Score = 84.2 bits (92), Expect = 2e-11
Identities = 166/245 (68%), Gaps = 8/245 (3%)
Strand=Plus/Minus
Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612
|| ||||| ||||| || ||||| | || || || |||||||| |||| || ||
Sbjct 955393 AAGATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATTACTCTCGAGGTTGAACCT 955334
Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672
||||| | | | ||||| |||||| |||||||||| | || |||
Sbjct 955333 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCATAATAAAGAAGGAATTCCTCCTGAT 955274
Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGA 107728
||||||||||| || | | || || || ||||| |||||| || || | ||
Sbjct 955273 CAGCAGAGACTGATCTTGCCTGGCAAGCAACTGGAAGATGGACGC----ACTTTGTCTGA 955218
Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAA 107788
||||||||||||||||||||| || | || | ||||||||| | || || || |||
Sbjct 955217 CTACAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTGCTAA 955158
Query 107789 TAAAA 107793
||||
Sbjct 955157 GAAAA 955153
>seq59
Length=2579055
Score = 82.4 bits (90), Expect = 6e-11
Identities = 159/232 (69%), Gaps = 16/232 (7%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGG----AGGC 107611
||||| ||||| || ||||| | || || || ||||| || ||| ||| | ||
Sbjct 1130678 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCG---CGGTTGAACGC 1130622
Query 107612 TGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGA 107671
| | ||||| | | | ||||| |||||| ||||| ||||| | || ||
Sbjct 1130621 TCG-GATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGA 1130563
Query 107672 TCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGG 107727
|||||||||||| || | ||| || || || ||||| |||||| || || | |
Sbjct 1130562 TCAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGC----ACTTTGTCTG 1130507
Query 107728 ACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGG 107779
|||||||||||||||||||||| || | || | ||||||||| | || ||
Sbjct 1130506 ACTACAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGG 1130455
>seq47
Length=4803410
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614
|||||| || ||||| || || || || || || ||||| ||| | || |||| | |
Sbjct 4290092 AATGCAGATCTTTGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 4290033
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|| || ||| | || || ||||| || ||||| ||| | ||| || ||
Sbjct 4290032 TGACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAAGAGGGCATCCCCCCTGACCA 4289973
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| | || | ||| || || ||||||||||||| || || | ||||||||
Sbjct 4289972 GCAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAGGACGGGCGCACCCTGTCTGACTACAA 4289913
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764
||| || |||||||| || ||||| ||||
Sbjct 4289912 CATCCAGAAGGAGTCCACTCTGCACCTGGT 4289883
>seq29
Length=5782310
Score = 82.4 bits (90), Expect = 6e-11
Identities = 150/220 (68%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 107552 TAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGC 107611
||| ||||| ||||| || ||||| | ||||| || ||||| || |||| || |
Sbjct 156407 TAAGATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACTCTCGAGGTTGAAAC 156466
Query 107612 TGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGA 107671
||||| | | | ||||| |||||| |||| ||||| | || ||
Sbjct 156467 CTCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGAATAAGGAAGGAATTCCTCCTGA 156526
Query 107672 TCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTA 107731
|||||||||||| || | ||| || || || |||| || | | ||| || | |||||
Sbjct 156527 TCAGCAGAGACTGATCTTTGCTGGCAAGCAATTGGAAGATGGACACACATTGTCTGACTA 156586
Query 107732 CAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGA 107771
||||||||||||||| || || | || | |||||||||
Sbjct 156587 CAACATTCAAAAGGAATCCACTCTTCATCTTGTGTTGAGA 156626
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398857874916277
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |