Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq947 145 7e-30 seq53 132 4e-26 seq225 131 2e-25 seq148 84.2 2e-11 >seq947 Length=397798 Score = 145 bits (160), Expect = 7e-30 Identities = 700/1099 (64%), Gaps = 47/1099 (4%) Strand=Plus/Plus Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264 ||||||| | ||| || || ||||| ||| | ||| |||| | |||||| | || | Sbjct 196144 ATGCCTTCTATGTCGCCGACCTGGGAGACATTTTAAAGAAACATCTGAGATGGTTAAAAG 196203 Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCA-GAACGACGAGAGAGTCCTC 20323 || | ||| |||| || ||||| || || || | | || | || | | | Sbjct 196204 CTCTTCCTCGGGTCACCCCCTTTTATGCAGTCAAATGCAATGATAGCAGAACCA-TAGTG 196262 Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383 |||||||| ||| || || || || |||||||||||||| ||| ||||| ||||| Sbjct 196263 AAGACCCTTGCTACCATTGGGACAGGATTTGACTGTGCCAGCAAGACCGAGATACAGTTG 196322 Query 20384 CTGCAAAATCTGGGAGT-TCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCC 20442 | |||| ||| || || || | |||| ||||| | | ||| ||||||||||| || Sbjct 196323 GTACAAAGTCTTGGGGTGTCTC-CAGAGAGGATTATCTATGCAAATCCTTGTAAACAAGT 196381 Query 20443 TTCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGA 20502 || || || | ||| || || | | ||||| | ||||||||||||||||||||| Sbjct 196382 GTCTCAGATTAAGTACGCTGCCAATAACGGAGTCCAGATGATGACTTTTGATAGTGAAGT 196441 Query 20503 AGAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGT 20562 || | | ||| ||| | ||| | | || ||| |||| || ||||| Sbjct 196442 TGAATTGATGAAAGTTGCCAGGGCGCATCCAAAGGCAAAGTTGGTTTTGCGGATTGCCAC 196501 Query 20563 GGATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAG 20622 ||||| || || ||| ||| || ||||| || ||||| || | | || ||| Sbjct 196502 TGATGATTCCAAAGCAGTCAGTCGCCTCAGTGTTAAATTTGGTGCCACACTCAAAATCAG 196561 Query 20623 CCAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCA 20682 | | || | || ||| | | | || | || || || || ||||||||||| Sbjct 196562 CAGGCTTCTTTTGGAATGGGCGAGAGAGCTAAATATTGATGTCATTGGTGTCAGCTTCCA 196621 Query 20683 CGTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAGGAG 20742 |||||| |||||||||| ||| | || | | ||||||| |||| ||| | | Sbjct 196622 CGTGGGAAGTGGCTGCACGGATCCTGAGACCTTTGTGCAAGCCATCTCTGATGCCCGCTG 196681 Query 20743 AGCTTTTGACTTTGGCACGCTGA--TGGGCTTTGACATGTACCTCTTGGATATTGGTGGC 20800 | |||||| | || ||||| | || || ||||||| || | |||| ||||| Sbjct 196682 TGTCTTTGACATGGG--AGCTGAGGTTGGTTTCAACATGTATCTGCTTCATATCGGTGGT 196739 Query 20801 GGCTTTCCCGGGATCAATGAGATTG---AGCCAACTTTTGAGGACATTGCAGAAGTCATT 20857 |||||| || ||||| |||| || ||| | ||||| || || | || || Sbjct 196740 GGCTTT-CCTGGATC--TGAGGATGTAAAGCTTAAATTTGAAGAGATCACCAGTGTGATC 196796 Query 20858 AACGCGGCCTTGGAAAGGCATTTTCCAGATGATGCCAACCTGACAATTATTGGTGAACCT 20917 ||| | ||| |||| | | | || || | || | || ||| || | || || Sbjct 196797 AACCCAGCCCTGGACAAGTACTTCCCGGCCGACTCGGGGGTGCAAATCATAGCGGAGCCC 196856 Query 20918 GGCAGGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTGCTAAAAA--GT 20975 ||||| |||||| | |||| || | || | ||||| | | ||||| ||||| Sbjct 196857 GGCAGATACTACATTGCCTCAGCCTTCACGCTCGCTGTTAACATCATTGCCAAAAAACTC 196916 Query 20976 GTGTTGAAG--ACA-----CTCCTG------------------GAGATAAAAAGTTTATG 21010 || || ||| ||| | ||| | || ||| |||||| Sbjct 196917 GTATTAAAGGAACAGACAGGTTCTGATGATGAAGATGAGTCGAGTGAACAAACCTTTATG 196976 Query 21011 TATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCATGCTCGT 21070 ||||| || || ||||| || ||||| ||||| ||||| | | | | ||||| | Sbjct 196977 TATTACGTGAACGATGGAGTGTATGGATCGTTTAATTGCATCCTCTATGATCATGCCCAC 197036 Query 21071 CCTATGCCTATGCTGCTTAA-AGAAAAACGCCTTGAAGACAAAGACTATGTTTCTAGCAT 21129 | ||| | |||| || ||| | || || | || ||||| | ||||| Sbjct 197037 GTGAAGCCCCTCCTGCAGAAGAGACCCAAACC-AGATGCGAAGTACTATTCAACCAGCAT 197095 Query 21130 TTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCAGAGCT 21189 ||||| || | || | ||| | ||| ||||||| |||| || || |||| ||| | Sbjct 197096 ATGGGGACCAACATGTAACGGCCTGGATCGCATTGTCGAGCGCTGCGACTTGCCCGAGAT 197155 Query 21190 TCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACA-GCTTGGTCAGCT-CT 21247 || |||||||| || | | |||||||||||||| ||||||| | ||| | ||| || Sbjct 197156 GCACGTGGGCGATTGAATGGTTTTTGAAAACATGGGTGCTTACACGGTTG--CTGCTGCT 197213 Query 21248 TCAACCTTTAACGGCTTCC 21266 || || || || || |||| Sbjct 197214 TCTACTTTCAATGGGTTCC 197232 >seq53 Length=5910346 Score = 132 bits (146), Expect = 4e-26 Identities = 695/1097 (63%), Gaps = 43/1097 (4%) Strand=Plus/Plus Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264 ||||||| | ||| | || || ||||| ||| | ||| |||| | |||||| | || | Sbjct 685375 ATGCCTTCTATGTCACCGACCTGGGAGACATTTTAAAGAAACATCTGAGATGGTTAAAAG 685434 Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCA-GAACGACGAGAGAGTCCTC 20323 || | ||| |||| || ||||| || || || | | || | || | | | Sbjct 685435 CTCTTCCTCGGGTCACCCCCTTTTATGCAGTCAAATGCAATGATAGCAGAACCA-TAGTG 685493 Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383 |||||||| || || || || || |||||||||||||| ||| ||||| || || Sbjct 685494 AAGACCCTTGCCACCATTGGGACAGGATTTGACTGTGCCAGCAAGACCGAGATACAATTG 685553 Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443 | |||| ||| || || | |||| ||||| | ||| ||||||||||| || Sbjct 685554 GTACAAAGTCTTGGGGTGCCTCCAGAGAGGATTATCAATGCAAATCCTTGTAAACAAGTG 685613 Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503 || || || | ||| || || | | ||||| | |||||||||| |||||||||| Sbjct 685614 TCTCAGATTAAGTACGCTGCCAACAATGGAGGCCAGATGATGACTTTCGATAGTGAAGTT 685673 Query 20504 GAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGTG 20563 || | | | | ||| | ||| | | || ||| |||| || ||||| Sbjct 685674 GAATTGATGATAGTTGCCAGGGCGCATCCAAAGGCAAAGTTGGTTTTGCGGATTGCCACT 685733 Query 20564 GATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAGC 20623 ||||| || || ||| | | || ||||| || ||||| | | | || ||| Sbjct 685734 GATGATTCCAAAGCAGTCTGTCGCCTCAGTGTTAAATTTGGTGTCACACTCAAAATGAGC 685793 Query 20624 CAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCAC 20683 | || | ||||| | | | | || | || || || || |||||||||||| Sbjct 685794 AGGCTTCTTTTGGAACAGACGAGAGAGCTAAATATTGATGTCATTGGTGTCAGCTTCCAC 685853 Query 20684 GTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAGGAGA 20743 ||||| |||||| ||| ||| | || | | || ||||||| |||| ||| | | Sbjct 685854 GTGGGAAGTGGCCGCACCGATCCTGAGACCTTCATGCAAGCCATCTCTGATGCCCGCTGT 685913 Query 20744 GCTTTTGACTTTGGCACGCTGA--TGGGCTTTGACATGTACCTCTTGGATATTGGTGGCG 20801 | |||||| | || ||||| | || || ||||||| || | || |||||||| | Sbjct 685914 GTCTTTGACATGGG--AGCTGAGGTTGGTTTCAACATGTATCTGCTTGACATTGGTGGTG 685971 Query 20802 GCTTTCCCGGGATCAATGAGATTG---AGCCAACTTTTGAGGACATTGCAGAAGTCATTA 20858 ||||| || ||||| |||| || ||| | ||||| || || | || || | Sbjct 685972 GCTTT-CCTGGATC--TGAGGATGTAAAGCTTAAATTTGAAGAGATCACCAGTGTGATCA 686028 Query 20859 ACGCGGCCTTGGAAAGGCATTTTCCAGATGATGCCAACCTGACAATTATTGGTGAACCTG 20918 || | ||| |||| | | | || |||| || | || ||| || | || || | Sbjct 686029 ACCCAGCCCTGGACAAGTACTTCCCAGCCGACCCGGGGGTGCGAATCATAGCGGAGCCCG 686088 Query 20919 GCAGGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTGCTAAAAA--GTG 20976 |||| ||||| | | |||| || | | | || || | | | ||||| ||||| || Sbjct 686089 GCAGATACTATGTTGCCTCAGCCTTTATGCTGGCAGTTAATATCATTGCCAAAAAACTTG 686148 Query 20977 TGTTGAAG--ACA------CTC-----CTGGAGAT------------AAAAAGTTTATGT 21011 | || ||| ||| ||| || |||| ||| ||||||| Sbjct 686149 TATTAAAGGAACAGACAGGCTCTGATGATGAAGATGAGTCGAGTGAACAAACCTTTATGT 686208 Query 21012 ATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCATGCTCGTC 21071 |||| | || ||||| || ||||| ||||| ||||| | | | | ||||| | Sbjct 686209 ATTACATGAACGATGGAGTGTATGGATCATTTAATTGCATCCTCTATGATCATGCCCACG 686268 Query 21072 CTATGCCTATGCTGCTTAA-AGAAAAACGCCTTGAAGACAAAGACTATGTTTCTAGCATT 21130 | ||| | |||| || ||| | || || || || ||||| | ||||| Sbjct 686269 TGAAGCCCCTTCTGCAGAAGAGACCCAAACC-AGATGAGAAGTACTATTCAACCAGCATA 686327 Query 21131 TGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCAGAGCTT 21190 ||||| || | || || ||| | ||| |||||| || | || || |||| ||| | Sbjct 686328 TGGGGACCAACATGTGACGGCCTGGATCTCATTGTCCAGGGCTGCGACTTGCCTGAGATG 686387 Query 21191 CAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAGCT-CTTC 21249 || |||||||| ||| | | |||||||||||||| |||||| ||| | ||| |||| Sbjct 686388 CATGTGGGCGATTGGATGGTCTTTGAAAACATGGGTGCTTAC-GCTGTTGCTGCTGCTTC 686446 Query 21250 AACCTTTAACGGCTTCC 21266 || || || || |||| Sbjct 686447 TACTTTCAATGGGTTCC 686463 >seq225 Length=4555982 Score = 131 bits (144), Expect = 2e-25 Identities = 398/608 (65%), Gaps = 8/608 (1%) Strand=Plus/Minus Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264 ||||||| | ||| || || ||||| ||| | ||| |||| | |||||| | || | Sbjct 88501 ATGCCTTCTATGTCGCCGACCTGGGAGACATTTTAAAGAAACATCTGAGATGGTTAAAAG 88442 Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCA-GAACGACGAGAGAGTCCTC 20323 || | ||| |||| || ||||| || || || | | || | || | | | Sbjct 88441 CTCTTCCTCGGGTCACCCCCTTTTATGCAGTCAAATGCAATGATAGCAGAACCA-TAGTG 88383 Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383 |||||||| ||| || || || || |||||||||||||| ||| ||||| ||||| Sbjct 88382 AAGACCCTTGCTACCATTGCGACAGGATTTGACTGTGCCAGCAAGACCGAGATACAGTTG 88323 Query 20384 CTGCAAAATCTGGGAGT-TCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCC 20442 | |||| ||| || || || | |||| ||||| | | ||| ||||||||||| || Sbjct 88322 GTACAAAGTCTTGGGGTGTCTC-CAGAGAGGATTATCTATGCAAATCCTTGTAAACAAGT 88264 Query 20443 TTCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGA 20502 || || || | ||| || || | | ||||| | ||||||||||||||| ||||| Sbjct 88263 GTCTCAGATTAAGTACGCTGCCAATAACGGAGTCCAGATGATGACTTTTGATAATGAAGT 88204 Query 20503 AGAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGT 20562 || | | ||| ||| | ||| | | || ||| |||| || ||||| Sbjct 88203 TGAATTGATGAAAGTTGCCAGGGCGCATCCAAAGGCAAAGTTGGTTTTGCGGATTGCCAC 88144 Query 20563 GGATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAG 20622 ||||| || || ||| | | || ||||| || ||||| || | | || ||| Sbjct 88143 CGATGATTCCAAAGCAGTCTGTCGCCTCAGTGTTAAATTTGGTGCCACACTCAAAATCAG 88084 Query 20623 CCAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCA 20682 | | || | ||| ||| | | | || | || || || || ||||||||||| Sbjct 88083 CAGGCTTCTTTTGGAACGGGCGAGAGAGCTAAATATTGATGTCATTGGTGTCAGCTTCCA 88024 Query 20683 CGTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAGGAG 20742 |||||| |||||||||| ||| | || | | ||||||| |||| ||| | | Sbjct 88023 CGTGGGAAGTGGCTGCACGGATCCTGAGACCTTTGTGCAAGCCATCTCTGATGCCCGCTG 87964 Query 20743 AGCTTTTGACTTTGGCACGCTGA--TGGGCTTTGACATGTACCTCTTGGATATTGGTGGC 20800 | |||||| | || ||||| | || || ||||||| || | ||||| ||||| Sbjct 87963 TGTCTTTGACATGGG--AGCTGAGGTTGGTTTCAACATGTATCTGCTTGATATCGGTGGT 87906 Query 20801 GGCTTTCC 20808 |||||||| Sbjct 87905 GGCTTTCC 87898 >seq148 Length=4816872 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 21125 AGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCA 21184 ||||| ||||| || | || || ||| | ||| ||||||| |||| || || |||| Sbjct 2113049 AGCATATGGGGACCAACATGTGACGGCCTGGATCGCATTGTCGAGCGCTGCGACTTGCCC 2113108 Query 21185 GAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACA-GCTTGGTCAG 21243 ||| | || |||||||| ||| | | |||||||||||||| ||||||| | ||| | | Sbjct 2113109 GAGATGCACGTGGGCGATTGGATGGTCTTTGAAAACATGGGTGCTTACACGGTTG--CTG 2113166 Query 21244 CT-CTTCAACCTTTAACGGCTTCC 21266 || |||| || || || || |||| Sbjct 2113167 CTGCTTCTACTTTCAATGGGTTCC 2113190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463523042712240