Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq58 280 2e-70 seq2 203 4e-47 seq3025 138 1e-27 seq311 113 5e-20 >seq58 Length=5701780 Score = 280 bits (310), Expect = 2e-70 Identities = 626/932 (67%), Gaps = 17/932 (2%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| ||| || | |||||||| || || | ||| ||| Sbjct 3157000 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCCG 3157059 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || |||||||| || |||| ||| ||| || | ||||| || | ||||| | Sbjct 3157060 TGTCAAACTTGTTGGCAAACAAGTGGTGC---TTGCGGAGCATCCAGTTCAAGTCCCCTG 3157116 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 ||||||||||||||| || ||||| || || || ||||| || || || |||| || | Sbjct 3157117 CTCCGAACACGCACACAGAACGCACATGGACCCCACTGCAGGGTGGGTAGGGGGCACCCT 3157176 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | |||||||||||| |||| ||||| || || ||||| | || || |||||||| | Sbjct 3157177 TGGAAACATCCCCCTCGAAGTACTGCCATTTGACAAACCTTGCAATTGCATGCATGTCAG 3157236 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | |||| ||||| | | | | || | || || ||| | || | ||||| | || Sbjct 3157237 ACATGTCATACTTCTGGCTTAAGGACAATGAGCCCGGGACATCAGGGATCCTCTGAATAG 3157296 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | || ||||| || || || || || | ||||||||| |||| || Sbjct 3157297 TGGCCCAGAGATACTCATCTGGGCTGTATGTATCTTTAGCCCACTCCATAAACTTTTGGA 3157356 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 ||| || | ||| | || || || ||| | || | ||| || || || | Sbjct 3157357 TTTTTTCATTCTCTAGCACATACCCCACATACATCCTACTGACCACAAAATAGGCACTGC 3157416 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 | ||||||| |||| | | ||||||| || |||||| || ||||| | | Sbjct 3157417 CTGAAAACAGGGGTGTTTCGAGAGGAGGGTGCATTTTGTCAGTCCCTGTGTTCGTCAGC- 3157475 Query 162539 TTCCCTCTACGACCACGTGTCT----CTTCCTCCACCTGGCCATCTTACTGGTAGACGGG 162594 ||||| || || || ||| | ||| ||||||| | | ||| ||| | | Sbjct 3157476 TTCCCATTA--ACAAC-TGTATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATT 3157532 Query 162595 TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGA 162654 || || ||||| |||| |||| | | ||| |||| || || || || | Sbjct 3157533 CTCTCAGTTTCTAGGTTGTTTTCACCCATTAGCGACTTGAGCTTCCGGACAATTTCCAAG 3157592 Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714 ||||| |||| |||||| || | ||||| ||||| || | || ||||| | | || Sbjct 3157593 TTGGTTTTAATGGGAAAATCCATACCGCAAAGATTTATCAAGTACTTCCAGTCTGCACTC 3157652 Query 162715 AGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTAC 162774 | | ||| || || || | ||||| || |||||||| || ||||||||||| || ||| Sbjct 3157653 ATCCTGTAGAGGTCTTGCATGCAGTTGAGGTCGGCCTGAACCCGACTCCACGAGGCATAC 3157712 Query 162775 ACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATC 162834 || || ||||||| | | |||| ||||||||||| ||| || || | || || ||| Sbjct 3157713 ACCACACTCTCCAGCTGACTGGCCACAAAGACATTACTGAAGCAGGATGCGATGCCGATC 3157772 Query 162835 A---CGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891 | |||||| || | ||| || | || || || ||||| | |||||| | |||| Sbjct 3157773 ACCGCGGCCAAAAAGGA-ATC--CTCTGACTTTCTGTCCACGTGAATGCAGTAGAAATTC 3157829 Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951 ||||| || ||||| ||||| | || || | ||| || || || || || ||||| Sbjct 3157830 TGAGGCATATAAATGGCTCTCAGGAGCCTGTCAAGCATTTCGATTTTGTGATGAACCACT 3157889 Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 |||||||| |||||||| || || |||| || Sbjct 3157890 ATAGAATATGCTATGGGAAATTCTTCCTCTTC 3157921 >seq2 Length=17817800 Score = 203 bits (224), Expect = 4e-47 Identities = 238/322 (74%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| | || |||| | ||||| || || || || ||||||||||| || | | Sbjct 454743 CAGAGAGGCTGAGGCAGGCTGTTCCCGAGATCTTCCCAGAACCAAAAGTATTGAAGAGGC 454802 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| ||||| ||||||| |||||||||||| || || | || || || ||| Sbjct 454803 ACTTGTAACACCCTTCATCCTCCAGGGTGGTGTTCCAGAAGGTAATGGTTGAGTTCTTGA 454862 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 || | || || || ||||| | | | | || || | ||||||||| ||||| || || | Sbjct 454863 GTTCCAGCTGGGTGATGTTTATCTTGCCTTTATAAGCAGGCTGGACCACAACCCCATGGT 454922 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 ||| |||||| ||| |||||||||| ||||| |||||| || |||||||| || || | Sbjct 454923 TCTTGCTGAAGGTGACCATGTTTTCTGGGCTAACAGCCTTGATTTTCTGCCATGTCACAA 454982 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | || ||||| | | |||| |||||||||||||| |||||||| ||||||| | || Sbjct 454983 TCAAGACTTCCTCGGAATTTTGCAGAGAGCATCTTAAGGAAGCAGGCGTGTTCAGCAGTT 455042 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | |||| | ||| || || || Sbjct 455043 CTTTTTCATTTTGGGTCACGAC 455064 Score = 100 bits (110), Expect = 3e-16 Identities = 174/251 (69%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 |||||||| ||| || ||| |||| | ||| | || | ||| | ||| |||| Sbjct 452189 ACAGTTTGCGTGACACTGGTCACATTCCCTAGGTGCAGCACCTGGCAGACCACTTCCT-- 452246 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| |||| || || ||||| || || |||| ||| || ||||| || ||||| Sbjct 452247 -TCCCCACCTGACGCTTGGGGTCTTTGACCTGGAGAACGCTCGTGACAGACGTGGTCCCA 452305 Query 171623 TTACGATGTA---GAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAA 171679 || | || | |||| | |||||| ||||| || || || || | |||||||| Sbjct 452306 TTGGGGTGCAAGAGAACC---TCAGTACTGTTTTCAATCCCTGACCCAGACACTTTCCAG 452362 Query 171680 AATATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAG 171739 | || ||||| ||||| | ||| | ||||||||||| || |||| | ||||| ||| Sbjct 452363 GAGATCACAGGGGCTGGGCGGGCATTGGCAGAGCAAGTGATATTTAGGCGGTCTTCAAAG 452422 Query 171740 AACTCATAGTG 171750 || | ||| || Sbjct 452423 AATTTATACTG 452433 >seq3025 Length=103863 Score = 138 bits (152), Expect = 1e-27 Identities = 393/593 (66%), Gaps = 17/593 (3%) Strand=Plus/Plus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || | | |||||| || | | || || | | || Sbjct 83611 TCCAGTTAAAGTAACTAAGGTATAACTTATTGTTTTTGTCAACTTCTTTCAGATACTTGG 83670 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | ||| | || | |||| Sbjct 83671 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 83730 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || ||||| || || |||| || || || | ||||| | || || | || || Sbjct 83731 TCTCATAATTTTCCCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCTAGAAAAGCAT 83790 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 |||||| ||||| || || || || |||| | ||||| ||||| | ||||| |||| Sbjct 83791 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAAGAAAGATAAAATT 83850 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 | || | ||||| ||| || || || | | ||| | ||| ||||| | | | | Sbjct 83851 TGCAAGTAGATATGGTA--GGAATCAAATTTTTATCATTCACATACTCTCCAAATGCTTG 83908 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || ||| ||| || ||||| ||| || || || ||| | | Sbjct 83909 CCCATAGGTATGGATTTCAATGCTTTTGCTTAGCTCATTGTAATA-CTTGACCCTCGCAT 83967 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || |||||||| |||||||| |||||||| || || Sbjct 83968 GCTCAGGGTTCCAGTTACTTACAACCCAGCACACTAACTT-CTCTTTGCTTGGCAC---- 84022 Query 177303 TTCGATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361 ||| | | | | || | | || | ||| | | || || ||||| || ||||| || Sbjct 84023 TTCAAACATGAAGGGGTTTGTGCTCACCGTCAAGAAGCCGTAAGGCACTTGGATATCTGA 84082 Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGGG 177419 ||| || | ||| || | || | ||||| |||| ||| || | || |||| ||| Sbjct 84083 GTCACGGCGGTAAGTCAGAGTCAAGTTGAACAGGTGTTCGATGCCACTCTTTTG--GGGC 84140 Query 177420 CTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCT 177472 ||| | | || ||||| || |||||||| ||||| || || |||| ||| || Sbjct 84141 GTGTGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCT 84193 >seq311 Length=3906238 Score = 113 bits (124), Expect = 5e-20 Identities = 230/336 (68%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 |||||||| ||||||||| | |||||||| || || || ||| | | ||| || Sbjct 2254954 ACCATCTCGGCATTGGTCTTTATAGGAAAGTCCGTCCCACATGTATTCAGTAAGTATCTC 2254895 Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 || | | ||||| || | | || |||| | |||||| || || ||||| || | Sbjct 2254894 CA--TGGCACTGAGCTCTGGAGCAAGTCCTCCATACAGTTTAGGTCAGCCTGCACCCTGG 2254837 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || || || || || | ||||| || |||| | |||||||| ||| |||| Sbjct 2254836 ACCAGGAGGCATAAACCACCCGAACCAACTTACTGGCTATGAAGACATTTGGGAAGCACG 2254777 Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878 | || ||| || | || ||| | ||| | | || | |||| ||| ||||| || Sbjct 2254776 ACACAATCGCCTTGACTGCCTCTTTGAAAGTTTCTGGG--GATTTCTCATCCACGTGGAC 2254719 Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938 ||||||| ||||||||||| || | || | ||| | ||| ||||| |||| ||||| Sbjct 2254718 ACAGTATATGTTCTGAGGGGCATACAAAGCTCGCAGCAGTCTTTCGAAGTTCTCGATCTT 2254659 Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974 | ||| ||||| ||||| || || || ||||| || Sbjct 2254658 CTCGTGGACCACCATAGAGTATGCAATAGGGAAGTC 2254623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578403852052800