Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1020 262 3e-65 seq417 197 1e-45 seq1832 156 3e-33 seq148 107 2e-18 seq537 86.0 5e-12 seq528 86.0 5e-12 seq158 86.0 5e-12 >seq1020 Length=850931 Score = 262 bits (290), Expect = 3e-65 Identities = 630/940 (67%), Gaps = 20/940 (2%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | || || || | || ||| || ||||| | ||| || ||||| |||| Sbjct 338176 TTTGTCATCTTCCCCATCGAGTACTGTGATATTTGGCAGAGGTATAAGAAAGCTGAGGCT 338235 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCAT 43817 || ||||||||||| ||| | || ||| | | || ||| | ||||| | ||| | | | Sbjct 338236 TCCTTTTGGACAGCTGAAAAGGTGGATCTTTCCAAGGACATTCAGCAC-TGGGAATCCCT 338294 Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877 || || | || | | | |||||||| ||| |||| || ||||| ||||| || | Sbjct 338295 GAAG-CCTGAGGAGAGATACTTTATATCCCACGTTCTGGCTTTCTTTGCAGCGAGTGATG 338353 Query 43878 GGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCA 43936 | || || |||||||| ||||| |||||| ||||||||||| |||| ||||||| Sbjct 338354 GCATCGTAAATGAAAACTTGGTGGAGCGGTTTAGCCAAGAAGTTCAGATTA-CAGAAGCC 338412 Query 43937 CGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTT 43996 || ||||| |||| || ||| ||||||| ||||| || ||||| || ||||||||||| Sbjct 338413 CGCTGTTTCTATGACTTCCAATTTGCCATGGAAAACATCCATTCTGAGATGTACAGTCTC 338472 Query 43997 CTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAA 44056 || | || || || || |||||| | || | | | | || || || || || Sbjct 338473 CTCACTGACACTTATATTAAAGATTCCAAAGAAAGGGAATTTCTCTTCAACGCCATCGAG 338532 Query 44057 ACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGA-TAAATTCAA--AT 44113 ||| | ||| | || | || ||||| |||||| | | |||| | ||| | Sbjct 338533 ACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGCATTGGACTGGGGACAAAGAG 338592 Query 44114 GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGA 44173 | | | | || ||||| |||| || ||||| | ||||||||| || ||||||| || Sbjct 338593 GGTACCTACGGGGAACGGGTTGTGGCTTTTGCTGCTGTGGAAGGAATCCTCTTTTCTGGT 338652 Query 44174 TCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCA 44233 || ||||| | ||||| ||| | |||||||| || |||||||||| | | ||||| Sbjct 338653 TCTTTTGCATCGATATTCTGGCTCAAGAAACGTGGCCTGATGCCTGGCCTCGCCTTTTCC 338712 Query 44234 AATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGA 44293 ||||| | | || | ||||| || ||||| || || ||||| ||| || | | | Sbjct 338713 AATGAACTTACTAGCAGAGATGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAA 338772 Query 44294 TATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTA 44353 | || | | | || ||||| ||| | | | || || || | | || || Sbjct 338773 CACCT---GGTCCACAAACCTTCCGAGCAGAGAGTGAAGGAAATAATTATTAATGCCGTT 338829 Query 44354 AAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA-TGA 44412 |||||| || || || | || || || ||||| || | || || ||||| || Sbjct 338830 CGGATAGAGCAGGAGTTCCTCACGGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGC 338889 Query 44413 ACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTG 44472 || || ||||| || |||||||| | | | ||||| || | | |||| || |||| Sbjct 338890 AC-ATTAATGAAGCAGTATATTGAGTTCGTGGCAGACCGACTTATGCTGGAGCTAGGTTT 338948 Query 44473 CGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGG 44532 | || | | ||| |||| || ||||| |||||||| |||||||| ||||||| Sbjct 338949 TGGCAAGGTTTTCAGAGTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGG 339008 Query 44533 CAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATGATAA- 44591 || || ||| ||||| || | || || ||||||||| | ||||| | ||| || Sbjct 339009 GAAGACTAAC---TTTGAGAAGAGAGTAGGCGAATATCAGAGGATGGGAATGATGTCAAG 339065 Query 44592 --CAAGTGACAATAAATTTACTACGGATGAAGATTTCTAA 44629 ||| || ||| ||||| ||||| || |||||| Sbjct 339066 TCCAACAGAGAATTCTTTTACCTTGGATGCTGACTTCTAA 339105 >seq417 Length=2207251 Score = 197 bits (218), Expect = 1e-45 Identities = 496/748 (66%), Gaps = 12/748 (2%) Strand=Plus/Minus Query 43889 GAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTA 43947 ||||| ||||| ||||| |||||||||||| |||| ||||||| || ||||| || Sbjct 864361 GAAAACTTGGTGGAGCGGTTAA-GCAAGAAGTTCAGATTA-CAGAAGCCCGCTGTTTCTA 864304 Query 43948 TGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATAC 44007 ||| || |||||| |||| ||||| |||||||| || ||||| ||||| || || || || Sbjct 864303 TGGCTTCCAAATTACCATGGAAAACATTCATTCTGAGATGTATAGTCTCCTCATTGACAC 864244 Query 44008 GTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGC 44067 ||||| |||||| | || | | | | || || || || || ||| | ||| Sbjct 864243 TTACATTAAAGATTCCGAAGAAAGGGAATTTCTCTTCAACGCCATGGAGACAATGCCTTG 864184 Query 44068 GATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATTCAAATGATTCTTTTGG 44124 | || | | |||| ||||||| | ||||| | | | | | | | || Sbjct 864183 TGTAAAGAAGGAGGCAGCCTGGGCCTTGCGTTGGATCGGGGACAAAGAGGCTACCTACGG 864124 Query 44125 AGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGC 44184 ||||| |||| | ||||| | ||||||||| || |||||||| || || |||| | | Sbjct 864123 GGAACGGGTTGTGGACTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGAGTC 864064 Query 44185 CATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAAT 44244 ||||| ||| | |||||||| | |||||||||| | |||||||| ||||| | || Sbjct 864063 GATATTCTGGCTCAAGAAACGCAGCCTGATGCCTGGCCTCACGTTTTCCAATGAACTTAT 864004 Query 44245 AAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGA 44304 || | ||||| || ||||| || || ||||| ||| || | | | | || | Sbjct 864003 TAGCAGAGATGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAACACCT---GGT 863947 Query 44305 CGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACA 44364 | | || ||||| || | | | || || || | | || || ||||||| || Sbjct 863946 CCACAAACCTTCCGAGCAGGGAGTGAAGGAAATAATTATTAATGCCGTTCAGATAGAGCA 863887 Query 44365 AGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAA 44424 | ||| || | || || || | || || || || |||||| | || ||||| Sbjct 863886 GGGATTCATCAAGGAGGCCTTGCCCATGAAGTTCATTGGGATGAATTGCATGTTAATGAA 863827 Query 44425 CCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTA 44484 || |||||||| | | | ||||| || | | |||| || |||| | || | Sbjct 863826 GCAGTATATTGAGTTCGTGGCAGACCGACTTATGCTGGAGCTAGGTTTTGGCAAGGTTTT 863767 Query 44485 TATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTT 44544 ||| |||| || ||||| | |||||| |||||||| ||||||| || || ||||| Sbjct 863766 CGGAGTAGAAAATCCATTTGACTATATGGAGAATATTTCACTGGAAGGGAAGACTAACTT 863707 Query 44545 TTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATGATAA---CAAGTGACAA 44601 |||| || | || || || |||||| | ||||| | ||| || ||| || || Sbjct 863706 CTTTGTGAAGAGAGTAGGCGAGTATCAGAGGATGGGAATGATGTCAAGTCCAACAGAGAA 863647 Query 44602 TAAATTTACTACGGATGAAGATTTCTAA 44629 | ||||| ||||| || |||||| Sbjct 863646 TTCTTTTACCTTGGATGCTGACTTCTAA 863619 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 43684 AGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTA 43743 |||||| || | | |||||| | || || || | || ||||| || ||||| ||||| Sbjct 864761 AGAAAACCCTCGTCGCTTTGTCATCTTCCCTATCGAGTACCATGATATTTGGCAGATGTA 864702 Query 43744 CAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGAC--TTA 43801 || ||||| |||| || ||||||||||| |||||||| ||| | | || ||| | | Sbjct 864701 TAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAAGAAGTGGATCTTTCCAAGGACATTCA 864642 Query 43802 GCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTT 43861 || | ||| | | | || || | || | | | |||||||| ||| |||| || Sbjct 864641 GC-CGCGGGAAT-CCCTGAAGCCTGAGGAGAGATACTTTATATCCCATGTTCTGGCTTTC 864584 Query 43862 TTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGT 43899 ||||| |||| | ||| || || ||||||| ||||| Sbjct 864583 TTTGCGCCGAGTGCCGGCATGGTAAATGAAAGCTTGGT 864546 >seq1832 Length=302895 Score = 156 bits (172), Expect = 3e-33 Identities = 597/925 (65%), Gaps = 27/925 (3%) Strand=Plus/Minus Query 43679 CTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAA 43738 || |||||||| || | | ||| || | || || || | |||||||| | ||||| Sbjct 207362 CTGACAGAAAACCCTCTTTGCTTTCTCATCTTCCCTATGGAGTATCATGATCTTTGGCAG 207303 Query 43739 ATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGAC 43798 |||| || ||||| |||| || ||||||||||| |||| || || | | || ||| Sbjct 207302 ATGTGTAAGAAAGCTGAGGCTTCTTTTTGGACAGCTAAAGAGGTGAATCTTTCCAAGGAC 207243 Query 43799 TT--AGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCT----TTG--G 43850 | ||||| | ||| | | | || || | || | | |||||||| | || | Sbjct 207242 ATTCAGCAC-TGGGAATCCCTGAAG-CCTGAGGAGAGAGATTTTATACCCCACGTTCACG 207185 Query 43851 TTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTT-AGTCGGTTT 43909 || |||| || |||| || || | || ||||| |||||||| ||||| ||| ||| | Sbjct 207184 TTCTGGCTTTCTTTGTGGCAAGTGTTGGCATAGTAAATGAAAACTTGGTGGAGT-GGTGT 207126 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 | ||||| ||||| | ||||||| | ||||| ||||| || ||||||||||| ||| Sbjct 207125 GGCCAAGAGGTTCAGATGACAGAAGCCTGCTGTTTCTATGGCTTCCAAATTGCCATGGAA 207066 Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAG 44029 || || ||||| || |||| ||||| || | || || || || ||||| | ||| Sbjct 207065 AACATCCATTCTGAGATGTGTAGTCTCCTCACTGACACTTATAT--AAGATTCCAAAGAG 207008 Query 44030 AAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGG 44089 | | | | || || | || || ||| | ||| | | || ||| | ||| Sbjct 207007 AGGGAATTTCTCTTCAACACCATGGAGACAATGCCTTGTGGAAGGAAGAAGGCAAATTGG 206948 Query 44090 GCCCTTAAATGGAT---AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCA 44146 ||| | | ||| | | | | | | | | || ||| | |||| | ||||| Sbjct 206947 GCCTTGCATTGGGTTGGGGACAAAGAGGCTACCTACGGGGAATGGGTTGTGGACTTTGCT 206888 Query 44147 GTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGA 44206 | |||||| || | ||||| || || | |||| |||| ||| | |||||| | Sbjct 206887 GCCACGGAAGGAATCTCCTTTTTTGGTTCTTCTGCGTTGATATACTGGCTCAAGAAATGC 206828 Query 44207 GGTTTGATGCCTGGGTTGAC-GTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACA 44265 | |||||||||| | || |||||| |||||| | || || | ||||| || ||||| Sbjct 206827 AGCCTGATGCCTGGCCTCACTGTTTTCCAATGAGCTTATTAGCAGAGATGAGGGTTTACA 206768 Query 44266 TTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGAC 44325 | || ||||| | | || | | | | || | | |||| |||||| ||| Sbjct 206767 CCGTGACTTTGCCTACCTGATGTTCAAACACCT---GGTCCATAAACCTTCAGAGCAGAG 206711 Query 44326 AATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATT 44385 | | | || || || | | || || | |||||| || || || | || || || Sbjct 206710 AGTGAAGGAAATAATTATCAAAGCCGTTAGGATAGACCAGGAGTTCCTCCCAGAGGCCTT 206651 Query 44386 ACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGC 44445 || | || | || || |||||| | || || || || |||||||||| ||| || Sbjct 206650 GCCGCTGAAGCTCATTGGGATGAATTGCATGTTAATAAAGCAGTATATTGAATTCATGGC 206591 Query 44446 AGATCGTTTACTT---TTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTT 44502 ||| | |||| |||||| |||| || | | ||| |||| || || Sbjct 206590 AGA---CTGACTTAGGCAGGAACTAGGTTTTAGCAAGGTTTCCAGAGTAGAAAATCCATT 206534 Query 44503 TGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGG 44562 ||| ||||||| |||||||| ||||||| || || ||| | ||||| || | | || Sbjct 206533 TGACCTTATGGAGAATATTTCACTGGAAGGGAAGACTAACCTCTTTGAGAAGAGAGGAGG 206474 Query 44563 AGAATATCAGCGAATGGGCGTCATG 44587 || |||||| | || || || ||| Sbjct 206473 TGAGTATCAGAGGATAGGAGTGATG 206449 >seq148 Length=4816872 Score = 107 bits (118), Expect = 2e-18 Identities = 96/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| ||||| |||||| || ||||| ||||| || |||||||| Sbjct 2364296 CGGTTTAGCCAAGAAGTTCAGATTAC-AGAAGCCCGCTGTTTCTATGGCTTCCAAATTGC 2364238 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| || ||||||||||| || || || || || || |||||| Sbjct 2364237 CATGGAAAACATCCATTCTGAGATGTACAGTCTCCTCATTGACACTTATATTAAAGAT 2364180 >seq537 Length=2461945 Score = 86.0 bits (94), Expect = 5e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| | || || || ||| | || ||||| ||||| || || || |||| Sbjct 243439 TGATGGCCCTCCCTCCGTGCCATGCCCTCTGCCAGTTCTACGTGGTGAACGGCGAGCTGT 243380 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | ||||| |||| || || || || |||||||| || || || || || ||||| || | Sbjct 243379 CCTGTCAGCTGTACCAGAGGTCGGGGGACATGGGCCTGGGTGTGCCCTTCAACATCGCCA 243320 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | || ||||||||||| || ||||| || ||| Sbjct 243319 GCTACGCTCTGCTCACCTACATGATCGCGCAC 243288 >seq528 Length=1363295 Score = 86.0 bits (94), Expect = 5e-12 Identities = 116/162 (72%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| ||||||||| || || | |||||| | || || ||||| ||||| ||||| Sbjct 1127769 AACAGTGGTTTGCACATAATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGG 1127828 Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 ||||| | ||||| ||||||||||| ||||| || | ||||| ||| | Sbjct 1127829 AGCATGGCTGGTAGCACAGGAGTTCATGACACTGTCGTCAACCAGTTGCTGTCCAAAATT 1127888 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 || || || | |||||||| || || ||||| ||||| ||| Sbjct 1127889 GATGGGGTAGAGCAACTGAACAACATCTTAGTCATTGGTATG 1127930 >seq158 Length=7371824 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || |||||||||||||| || ||||| || ||||| |||||||| || ||||| | Sbjct 3476933 AAAATCCCTTTGATTTTATGGAGAACATTTCTTTAGAAGGGAAAACAAATTTCTTTGAGA 3476992 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 |||| |||| ||| ||||| || | | |||||| Sbjct 3476993 AACGAGTTGCAGAGTATCAACGTTTTGCAGTCATG 3477027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397437142327465