Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1234 104 3e-17 seq39 100 3e-16 seq417 86.0 7e-12 seq148 86.0 7e-12 >seq1234 Length=904542 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||||||||| ||||||||| ||| || || || || || Sbjct 394996 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 394937 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | ||||||| ||||||||||| |||||||| || ||| Sbjct 394936 CCAATAGGCTGAAGCAAGTTAATGTTGTTGCTTCCCACAAAGTTCTGAGCCAAATTCACA 394877 Query 117425 ATCGT 117429 || || Sbjct 394876 ATAGT 394872 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| |||||||| ||||| ||||||||||| Sbjct 394996 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 394937 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || | ||| | ||||||| ||||| || |||||||||||||||||| Sbjct 394936 CCAATAGGCTGAAGCAAGTTAATGTTGTTGCTTCCCACAAAGTTCTGAGCCAAATTCACA 394877 Query 152149 ATCGT 152153 || || Sbjct 394876 ATAGT 394872 >seq39 Length=5511098 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | || || | |||||||||||| ||||| || |||||||| Sbjct 683994 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTAGTACCAAACTGA 683935 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | |||||| || || ||| ||||| ||||||||||||||||| | | Sbjct 683934 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 683875 Query 152149 ATCGT 152153 || || Sbjct 683874 ATGGT 683870 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| || |||| ||||||||||||| || | ||||| || || Sbjct 683994 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTAGTACCAAACTGA 683935 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| |||||||||||| || ||| |||||||| || |||||||| |||| | Sbjct 683934 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 683875 Query 117425 ATCGT 117429 || || Sbjct 683874 ATGGT 683870 >seq417 Length=2207251 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || ||||||||||| || | |||||| ||||||| ||||||||||| || | || ||| Sbjct 863989 CCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCTGCGTTTC 864048 Query 74829 TTCAACCAAAAGAT-GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887 || | ||| || || | | || || |||||| |||||||| ||||| ||| ||||| Sbjct 864049 TTGAGCCAGAATATCGACTCA-AAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAA 864107 Query 74888 GGCGACAAGGCGTT 74901 | | |||| |||| Sbjct 864108 GTCCACAACCCGTT 864121 >seq148 Length=4816872 Score = 86.0 bits (94), Expect = 7e-12 Identities = 99/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||| | ||||||||||| || || || ||||| Sbjct 2362151 TCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGGCCGCGTTTCTTG 2362210 Query 74832 AACCAAAAGAT-GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGC 74890 | ||| || || | | || || |||||| |||||||| ||||| ||| ||||| || Sbjct 2362211 AGCCAGAATATCGACGCA-AAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGC 2362269 Query 74891 GACAAGGCGTT 74901 |||| |||| Sbjct 2362270 CACAACCCGTT 2362280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547189371101400