Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013
-01-16] 3,893 sequences; 2,400,150,193 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq47 114 8e-21
seq314 109 3e-19
seq85 104 1e-17
seq199 86.0 4e-12
seq33 86.0 4e-12
seq128 84.2 1e-11
>seq47
Length=4803410
Score = 114 bits (126), Expect = 8e-21
Identities = 165/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| ||||| || |||| |||| || |||||| |||||| || ||||| || || ||
Sbjct 4289636 GCCCCCTCTGAGGCGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 4289695
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
|| || ||| |||| || || || || |||||||| || || | ||| ||||| || ||
Sbjct 4289696 CAGGGTGCGCCCGTCCTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGG 4289755
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657
| ||||||||||| |||| || | || || | || ||||| | |||||
Sbjct 4289756 GATGCCCTCCTTGTCCTGGATC-TTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCA 4289814
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
| |||| ||| || || || ||||| || || ||||| || |||||||||
Sbjct 4289815 CCTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCATG 4289864
Score = 105 bits (116), Expect = 4e-18
Identities = 155/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 34492 CGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCG 34551
|||| |||| || |||||| |||||| || ||||| || || || || || ||| ||
Sbjct 4289421 CGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCG 4289480
Query 34552 TCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTG 34611
|| || || ||||| |||||||| || || | ||| ||||| || || | |||||||||
Sbjct 4289481 TCCTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTG 4289540
Query 34612 TCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTAT 34670
|| |||| || | || || | || ||||| | |||||| |||| || ||
Sbjct 4289541 TCCTGGATC-TTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGAT 4289599
Query 34671 CGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || ||||| || || ||||| || |||||||||
Sbjct 4289600 GGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCATG 4289636
>seq314
Length=2398313
Score = 109 bits (120), Expect = 3e-19
Identities = 157/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| || | |||||| || || ||| ||| || || || ||||| ||||| || || ||
Sbjct 2323431 AGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGG 2323490
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| || ||||| || ||||| || | |||||| ||||| ||||| | ||||||
Sbjct 2323491 CCATCTTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGCCCTCC 2323550
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| ||| ||| | ||| || | ||| ||||| | ||| || || | |||
Sbjct 2323551 TTGTCTTGGAT-TTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCGACCTCGAGGGT 2323609
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || | || |||||||| ||||||||
Sbjct 2323610 GATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2323648
>seq85
Length=4131313
Score = 104 bits (114), Expect = 1e-17
Identities = 156/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| || | |||||| || || ||| ||| || || || ||||| ||||| || || ||
Sbjct 1818193 AGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGG 1818252
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| || ||||| || ||||| || | |||||| ||||| ||||| | ||||||
Sbjct 1818253 CCATCTTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGCCCTCC 1818312
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| ||| ||| | ||| || | ||| | ||| | ||| || || | |||
Sbjct 1818313 TTGTCTTGGAT-TTTGGCTTTGACATTCTCAATAGCGTCACTGGGCTCGACCTCGAGGGT 1818371
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || | || |||||||| ||||||||
Sbjct 1818372 GATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1818410
>seq199
Length=3010087
Score = 86.0 bits (94), Expect = 4e-12
Identities = 152/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| || | |||||| || || ||| ||| || || || ||||| ||||| | || ||
Sbjct 689114 AGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACCGAGTACGG 689055
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| || ||||| || ||||| | | || ||| ||||| ||||| | ||||||
Sbjct 689054 CCATCTTCCAGCTGTTTGCCCGCAAAAGTCAGACTCTGCTGGTCAGGCGGGATGCCCTCC 688995
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| ||| ||| | ||| || | | | ||||| | ||| || || | |||
Sbjct 688994 TTGTCTTGGAT-TTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACCTCGAGGGT 688936
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || | || |||||| | ||||||||
Sbjct 688935 GATGGTCTTGCCCGTCAGGGTCTTCACAGAGATCTGCAT 688897
>seq33
Length=6086033
Score = 86.0 bits (94), Expect = 4e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | ||| | |||||| | ||| |||||| ||||||||||||||| || || ||
Sbjct 2214769 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 2214828
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| || || | ||||| ||||| || || |||||||| | | ||| || || || ||
Sbjct 2214829 AAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAATATCAGTCTCTGCTGATCAGGAGGA 2214888
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659
| ||| ||||| || |||||| |||| | ||||| | | || ||
Sbjct 2214889 ATTCCTTCCTTATCCTGAATCTTTGCCTTTACATTTTCCATTGTACCCGAGGGTTCAACC 2214948
Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| | || || || || || || | |||||||| |||||||||||
Sbjct 2214949 TCGAGAGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 2214995
>seq128
Length=2980057
Score = 84.2 bits (92), Expect = 1e-11
Identities = 154/221 (70%), Gaps = 5/221 (2%)
Strand=Plus/Plus
Query 34489 AGACGCAA--CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTC 34546
||| |||| |||||| || || ||| ||| || || || ||||| ||||| || || |
Sbjct 204310 AGAGGCAAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTAC 204369
Query 34547 GCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCT 34606
| | |||| || ||||| || ||||| || | | |||| ||||| ||||| | ||||
Sbjct 204370 GGCCATCTTTCAGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGCGGGATGCCCT 204429
Query 34607 CCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACG 34665
|||||||| ||| ||| | ||| || | ||| ||||| | ||| || || | |
Sbjct 204430 CCTTGTCTTGGAT-TTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGG 204488
Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| | || | | | | | || |||||||| ||||||||
Sbjct 204489 GTGA-CGGTCTCGCCTTCAGGGTCTTCACAAAGATCTGCAT 204528
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314714667359069
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |