Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq47 114 8e-21 seq314 109 3e-19 seq85 104 1e-17 seq199 86.0 4e-12 seq33 86.0 4e-12 seq128 84.2 1e-11 >seq47 Length=4803410 Score = 114 bits (126), Expect = 8e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| || |||| |||| || |||||| |||||| || ||||| || || || Sbjct 4289636 GCCCCCTCTGAGGCGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 4289695 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || ||| |||| || || || || |||||||| || || | ||| ||||| || || Sbjct 4289696 CAGGGTGCGCCCGTCCTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGG 4289755 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || | || || | || ||||| | ||||| Sbjct 4289756 GATGCCCTCCTTGTCCTGGATC-TTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCA 4289814 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | |||| ||| || || || ||||| || || ||||| || ||||||||| Sbjct 4289815 CCTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCATG 4289864 Score = 105 bits (116), Expect = 4e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 34492 CGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCG 34551 |||| |||| || |||||| |||||| || ||||| || || || || || ||| || Sbjct 4289421 CGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCG 4289480 Query 34552 TCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTG 34611 || || || ||||| |||||||| || || | ||| ||||| || || | ||||||||| Sbjct 4289481 TCCTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTG 4289540 Query 34612 TCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTAT 34670 || |||| || | || || | || ||||| | |||||| |||| || || Sbjct 4289541 TCCTGGATC-TTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGAT 4289599 Query 34671 CGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || ||||| || || ||||| || ||||||||| Sbjct 4289600 GGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCATG 4289636 >seq314 Length=2398313 Score = 109 bits (120), Expect = 3e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | |||||| || || ||| ||| || || || ||||| ||||| || || || Sbjct 2323431 AGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGG 2323490 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || ||||| || ||||| || | |||||| ||||| ||||| | |||||| Sbjct 2323491 CCATCTTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGCCCTCC 2323550 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| ||| | ||| || | ||| ||||| | ||| || || | ||| Sbjct 2323551 TTGTCTTGGAT-TTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCGACCTCGAGGGT 2323609 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || |||||||| |||||||| Sbjct 2323610 GATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2323648 >seq85 Length=4131313 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | |||||| || || ||| ||| || || || ||||| ||||| || || || Sbjct 1818193 AGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGG 1818252 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || ||||| || ||||| || | |||||| ||||| ||||| | |||||| Sbjct 1818253 CCATCTTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGCCCTCC 1818312 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| ||| | ||| || | ||| | ||| | ||| || || | ||| Sbjct 1818313 TTGTCTTGGAT-TTTGGCTTTGACATTCTCAATAGCGTCACTGGGCTCGACCTCGAGGGT 1818371 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || |||||||| |||||||| Sbjct 1818372 GATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1818410 >seq199 Length=3010087 Score = 86.0 bits (94), Expect = 4e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | |||||| || || ||| ||| || || || ||||| ||||| | || || Sbjct 689114 AGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACCGAGTACGG 689055 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || ||||| || ||||| | | || ||| ||||| ||||| | |||||| Sbjct 689054 CCATCTTCCAGCTGTTTGCCCGCAAAAGTCAGACTCTGCTGGTCAGGCGGGATGCCCTCC 688995 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| ||| | ||| || | | | ||||| | ||| || || | ||| Sbjct 688994 TTGTCTTGGAT-TTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACCTCGAGGGT 688936 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || |||||| | |||||||| Sbjct 688935 GATGGTCTTGCCCGTCAGGGTCTTCACAGAGATCTGCAT 688897 >seq33 Length=6086033 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| | |||||| | ||| |||||| ||||||||||||||| || || || Sbjct 2214769 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 2214828 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| ||||| || || |||||||| | | ||| || || || || Sbjct 2214829 AAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAATATCAGTCTCTGCTGATCAGGAGGA 2214888 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||| ||||| || |||||| |||| | ||||| | | || || Sbjct 2214889 ATTCCTTCCTTATCCTGAATCTTTGCCTTTACATTTTCCATTGTACCCGAGGGTTCAACC 2214948 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || || || || || | |||||||| ||||||||||| Sbjct 2214949 TCGAGAGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 2214995 >seq128 Length=2980057 Score = 84.2 bits (92), Expect = 1e-11 Identities = 154/221 (70%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 34489 AGACGCAA--CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTC 34546 ||| |||| |||||| || || ||| ||| || || || ||||| ||||| || || | Sbjct 204310 AGAGGCAAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTAC 204369 Query 34547 GCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCT 34606 | | |||| || ||||| || ||||| || | | |||| ||||| ||||| | |||| Sbjct 204370 GGCCATCTTTCAGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGCGGGATGCCCT 204429 Query 34607 CCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACG 34665 |||||||| ||| ||| | ||| || | ||| ||||| | ||| || || | | Sbjct 204430 CCTTGTCTTGGAT-TTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGG 204488 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || | | | | | || |||||||| |||||||| Sbjct 204489 GTGA-CGGTCTCGCCTTCAGGGTCTTCACAAAGATCTGCAT 204528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314714667359069