Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq537 168 6e-37 seq472 145 7e-30 seq210 114 1e-20 >seq537 Length=2461945 Score = 168 bits (186), Expect = 6e-37 Identities = 134/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||||||||| || || |||||||| ||||| || | ||| Sbjct 243289 TGCGCGATCATGTAGGTGAGCAGAGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCC 243348 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||| ||||| | || || ||||| ||||||||||| || ||| | |||||||| ||| Sbjct 243349 ATGTCCCCCGACCTCTGGTACAGCTGACAGGACAGCTCGCCGTTCACCACGTAGAACTGG 243408 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| |||||||| ||||| ||||||||||| ||||| Sbjct 243409 CAGAGGGCATGGCACGGAGGGAGGGCCATCAGAGGAAGATC 243449 Score = 168 bits (186), Expect = 6e-37 Identities = 134/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||||||||||| ||||| |||||||| |||||||||| |||||||| | ||| Sbjct 243449 GATCTTCCTCTGATGGCCCTCCCTCCGTGCCATGCCCTCTGCCAGTTCTACGTGGTGAAC 243390 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||| ||||| || || | ||||| |||||||| | || ||||| ||| Sbjct 243389 GGCGAGCTGTCCTGTCAGCTGTACCAGAGGTCGGGGGACATGGGCCTGGGTGTGCCCTTC 243330 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || |||||||||||||| ||||||||||| || Sbjct 243329 AACATCGCCAGCTACGCTCTGCTCACCTACATGATCGCGCA 243289 Score = 98.7 bits (108), Expect = 9e-16 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || |||||||| || || || || ||||| || || || || || Sbjct 245829 TATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTTCT 245888 Query 6959 CGAGATGG-GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 | | ||| ||| ||| | |||||| |||||||||||||| | || |||||||| || Sbjct 245889 CT-GTTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGAGACCCATTGGCATCCCAGATTTT 245947 Query 7018 CACCCCCCGGGACGAGAGCTCCTTGGTGTTCGT 7050 ||| ||| ||| || || ||||||| ||| || Sbjct 245948 CACTCCCTTGGAAGACAGTTCCTTGGCGTTTGT 245980 Score = 98.7 bits (108), Expect = 9e-16 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 34295 ACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGA 34354 || ||| ||||||| || || ||| ||| ||||| |||||||| || | ||||||||| Sbjct 245980 ACAAACGCCAAGGAACTGTCTTCCAAGGGAGTGAAAATCTGGGATGCCAATGGGTCTCGA 245921 Query 34355 GACTTTCTGGACAAGCGGGGGTTC-CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTA 34413 ||||| |||||| | ||| ||| ||| | | || || || || || ||||| || || Sbjct 245920 GACTTCTTGGACAGCCTGGGATTCTCCAAC-AGAGAAGAAGGGGATTTAGGCCCAGTTTA 245862 Query 34414 CGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 || || |||||||| || |||||||| || || Sbjct 245861 TGGCTTTCAGTGGAGGCATTTTGGGGCAGAATA 245829 >seq472 Length=2018034 Score = 145 bits (160), Expect = 7e-30 Identities = 425/651 (65%), Gaps = 24/651 (4%) Strand=Plus/Plus Query 6494 ATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATG 6553 |||||||||| |||| || | || ||||||| ||||| || || || | | Sbjct 352535 ATTTTGAGCTTCAGGAAAGGCCTTGGTTCTCGTTAAAGCTGCATTTTCAGAGATTCAACG 352594 Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613 || |||||||| ||| ||||||| | || ||||| | | | || || | | || Sbjct 352595 TGATTCAGGTAAATACGCGCATCTTCAAA-GTATGTATGAAGTTGCCTGGCTTCCAGCCT 352653 Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGC------ 6667 || || ||||||| ||| |||||||| ||| | | || |||||||| ||| Sbjct 352654 GTGATGTGTGCGATCACGTAGGTGAGCAGGGCGCAGCGGGCCATGTTGAAGGGCCATCGA 352713 Query 6668 ---------ACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCC 6718 || | || ||||||||| | | | | |||||||||||||||| Sbjct 352714 GGGCAAGAGACAGCCAAGCCCATGTCTGCTGCCCTCCTGTCCCGCTGGCAGGACAGCTCA 352773 Query 6719 CCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGA 6778 || || | ||| ||| ||||| |||| ||||| || || || | || ||| | || Sbjct 352774 CCGCTCACCACGGAGATCTGGCAAAGGGCATGGCAGGGAGGTAGGGACAGAAGATGAAGT 352833 Query 6779 TCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAA-GGT 6837 | || || ||||| | ||| | ||| ||| |||| | ||||| | ||||| || Sbjct 352834 ACTTTTGGATTCCAACCATACAGGATGATTCTTTTGTCCT-TGGGTTTGGTTTCAATTGT 352892 Query 6838 GTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCG 6897 | | | ||| | ||||| ||||| |||| || || ||||| || | || | Sbjct 352893 GCCAAACACCTTTTGCAGTTGGTCTACTCCTTGACCTGAATAATCTGAATCTTTGTTTTT 352952 Query 6898 ATACTCCGCCCCAAAGTG--TCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCC 6955 || || ||||| || || ||||||||| | || || || || || || || || || Sbjct 352953 GTATTCTGCCCCCAAATGCTTCTCCACTGCGAGCCATACACTGGACCTAAATCCCCTTCT 353012 Query 6956 TCCCGAGATGG-GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGAT 7014 || | ||| ||| ||| | |||||| ||||||| || | | || |||||||| Sbjct 353013 TC---TGTTGGAGAATCCCAGGCTGTCCAAGAAGTCTCAGGAGGCATTGGCATCCCAGAT 353069 Query 7015 CTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAG 7074 |||| ||| ||| || || ||||| || || | | ||| | | |||||||| | Sbjct 353070 TGTCACTCCCTTGGAAGACAGTTCCTTAGTATTTTTAGATCCCTTGATAAACCACAGTAA 353129 Query 7075 CTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAA 7125 |||||| | || ||||| ||| | |||| | | ||| ||| ||| ||||| Sbjct 353130 CTCCTCCAAAACACCCTTTCAGAATACACATGTTGTCATCAACAGAGGAAA 353180 Score = 145 bits (160), Expect = 7e-30 Identities = 425/651 (65%), Gaps = 24/651 (4%) Strand=Plus/Minus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 ||||| ||| ||| ||| | | |||| | ||| ||||| || | |||||| | |||||| Sbjct 353180 TTTCCTCTGTTGATGACAACATGTGTATTCTGAAAGGGTGTTTTGGAGGAGTTACTGTGG 353121 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339 || | | ||| | | || || ||||| || || ||| ||| |||| |||||||| Sbjct 353120 TTTATCAAGGGATCTAAAAATACTAAGGAACTGTCTTCCAAGGGAGTGACAATCTGGGAT 353061 Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTC-CCATCTCGGGAGGAGGGCGA 34398 || | | || ||||||| |||||| | ||| ||| ||| | || || || || Sbjct 353060 GCCAATGCCTCCTGAGACTTCTTGGACAGCCTGGGATTCTCCAACA---GAAGAAGGGGA 353004 Query 34399 CTTGGGCCCGGTCTACGGGTTCCAGTGGAGA--CACTTTGGGGCGGAGTATCGGGGGAGC 34456 || || || || || || | ||||||||| || || ||||| || || | Sbjct 353003 TTTAGGTCCAGTGTATGGCTCGCAGTGGAGAAGCATTTGGGGGCAGAATACAAAAACAAA 352944 Query 34457 GAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACC-TTGAA 34515 || | || ||||| || || |||| ||||| ||||| | ||| | | ||| ||||| Sbjct 352943 GATTCAGATTATTCAGGTCAAGGAGTAGACCAACTGCAAAAGGTGTTTGGCACAATTGAA 352884 Query 34516 GCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCT 34575 | ||||| | |||| ||| ||| | ||| | ||||| || || | || | ||| Sbjct 352883 ACCAAACCCA-AGGACAAAAGAATCATCCTGTATGGTTGGAATCCAAAAGTACTTCATCT 352825 Query 34576 GATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTC 34635 || | || || || ||||| |||| ||||| ||| ||| | || || |||||||| Sbjct 352824 TCTGTCCCTACCTCCCTGCCATGCCCTTTGCCAGATCTCCGTGGTGAGCGGTGAGCTGTC 352765 Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGT---------------GCC 34680 |||||||| | | | | ||||||||| || | || ||| Sbjct 352764 CTGCCAGCGGGACAGGAGGGCAGCAGACATGGGCTTGGCTGTCTCTTGCCCTCGATGGCC 352705 Query 34681 GTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGT 34740 |||||||| || | | ||| |||||||| ||| ||||||| || || || | | Sbjct 352704 CTTCAACATGGCCCGCTGCGCCCTGCTCACCTACGTGATCGCACACATCACAGGCTGGAA 352645 Query 34741 TCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCG 34800 || || | | | ||||| || | ||||||| ||| |||||||| ||| | || Sbjct 352644 GCCAGGCAACTTCATACATAC-TTTGAAGATGCGCGTATTTACCTGAATCACGTTGAATC 352586 Query 34801 GCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAAT 34851 || || ||||| ||||||| || | || |||| |||||||||| Sbjct 352585 TCTGAAAATGCAGCTTTAACGAGAACCAAGGCCTTTCCTGAAGCTCAAAAT 352535 >seq210 Length=2351586 Score = 114 bits (126), Expect = 1e-20 Identities = 197/285 (69%), Gaps = 1/285 (0%) Strand=Plus/Plus Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATG 34579 ||||||| ||||||||| ||| | |||| | ||||| || |||| ||| ||||| || Sbjct 112158 AACCCTGGTGACAGAAGAATCATCCTGTGTGGCTGGAATCCAAAGGCTCTTCCTCTTCTG 112217 Query 34580 GCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGC 34639 || || | || |||| |||| |||| ||||| | | |||||| |||||||||||| Sbjct 112218 GCCCTGTCTCCCCACCACGCCCTGTGCCGGTTCTATGCTGTGAATGGTGAGCTGTCCTGC 112277 Query 34640 CAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACAT-TGCTAGTTA 34698 ||| | | || | || ||| |||||| | || | ||| |||| ||| ||| || Sbjct 112278 CAGGTTTGCCACAGGTCTTGAGCCATGGGCCTGGGTGAGCCCTTCATCATCAGCTGTGTA 112337 Query 34699 CGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCA 34758 || ||||||| |||||| || | || | || || || | | | | Sbjct 112338 GGCCCTGCTCATTTACATGGTCTCACACAGCACAGGCCTGAAGCCAGCTAACTTCATAAT 112397 Query 34759 TACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCT 34803 ||| ||||| ||||| |||||||||||||| ||| | |||| ||| Sbjct 112398 TACTTTGGGAGATGCACATATCTACCTGAATCACGTGGAGCTGCT 112442 Score = 114 bits (126), Expect = 1e-20 Identities = 197/285 (69%), Gaps = 1/285 (0%) Strand=Plus/Minus Query 6542 AGCCGCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCA 6601 ||| |||| | ||| |||||||||||||| ||||| ||||| ||| | | | | Sbjct 112442 AGCAGCTCCACGTGATTCAGGTAGATATGTGCATCTCCCAAAGTAATTATGAAGTTAGCT 112383 Query 6602 GGAACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCA-ATGTT 6660 || || || | || | || |||||| ||||||| || || ||| ||| | Sbjct 112382 GGCTTCAGGCCTGTGCTGTGTGAGACCATGTAAATGAGCAGGGCCTACACAGCTGATGAT 112323 Query 6661 GAACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCC 6720 ||| ||| | || | |||||| ||| || | || | | ||||||||||||||| || Sbjct 112322 GAAGGGCTCACCCAGGCCCATGGCTCAAGACCTGTGGCAAACCTGGCAGGACAGCTCACC 112263 Query 6721 ATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 |||| | | ||||| |||| |||| |||| || | || |||| ||||| ||| | Sbjct 112262 ATTCACAGCATAGAACCGGCACAGGGCGTGGTGGGGAGACAGGGCCAGAAGAGGAAGAGC 112203 Query 6781 CTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTT 6825 ||| || ||||| | |||| | ||| ||||||||| ||||||| Sbjct 112202 CTTTGGATTCCAGCCACACAGGATGATTCTTCTGTCACCAGGGTT 112158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448240586430960