Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq2 181 9e-41 seq698 178 1e-39 seq393 159 3e-34 seq12 125 6e-24 seq79 113 4e-20 >seq2 Length=17817800 Score = 181 bits (200), Expect = 9e-41 Identities = 187/245 (76%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 1281 GAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACT 1340 ||||| | ||||| |||||||| ||| | || || |||||||||||||||| ||| Sbjct 454992 GAAGTCTTGATTGTGACATGGCAGAAAATCAAGGCTGTTAGCCCAGAAAACATGGTCACC 454933 Query 1341 TTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACT 1400 || || || |||| |||||||| || ||||| || || |||| || || ||||| || Sbjct 454932 TTCAGCAAGAACCATGGGGTTGTGGTCCAGCCTGCTTATAAAGGCAAGATAAACATCACC 454873 Query 1401 GAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGG 1460 |||| | ||| | ||| |||| || |||||||||||||| || |||| ||||||||| Sbjct 454872 CAGCTGGAACTCAAGAACTCAACCATTACCTTCTGGAACACCACCCTGGAGGATGAAGGG 454813 Query 1461 TGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTA 1520 || |||||||| | || || |||||||| ||||||||||| || |||| || || || Sbjct 454812 TGTTACAAGTGCCTCTTCAATACTTTTGGTTCTGGGAAGATCTCGGGAACAGCCTGCCTC 454753 Query 1521 ACCCT 1525 | ||| Sbjct 454752 AGCCT 454748 >seq698 Length=2098425 Score = 178 bits (196), Expect = 1e-39 Identities = 378/549 (69%), Gaps = 14/549 (3%) Strand=Plus/Minus Query 2141 TAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCAT 2200 ||||||| || || |||| || |||||||||||||| || || || | |||| | Sbjct 804556 TAAACTGCATCGCCGCTGCGTCCCGGAATATGGGCATTGGCAAGAACGGGGACTTGCCCT 804497 Query 2201 GGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCTTCTTC--CACT-G 2257 |||| || || | ||||||| || ||| |||| |||||| | | || || | | Sbjct 804496 GGCCCCCGCTCAGGAATGAATGCAAGTTTTTCCAAAGAATGACCACAACCTCATCAGTAG 804437 Query 2258 ACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAA-A 2316 | ||||||||| | || |||||||| || ||||||||||| || |||||| || | Sbjct 804436 AAGGTAAACAGAATTTGGTGATTATGGGTAGGAAGACATGGTTCTCTATTCCCAAGAAGA 804377 Query 2317 AGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCA 2376 | || |||| || ||||||| || | |||||||| ||| |||| || || || ||| Sbjct 804376 ATCA-ATCTTTAAAGGACAGAATTCATTTAGTTCTCAGCAGAGACCTCAAGGAACCTCCA 804318 Query 2377 CGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAAT-AG-GAC 2434 | || ||||| ||| |||| |||||| | ||| | || || ||||| || | || | Sbjct 804317 CAAGGAGCTCATTTTCTTGCCAAAAGTCTGGATGATGC-CTTAAAATT-TATTGAGCAAT 804260 Query 2435 CAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGG 2494 |||||||| | | | ||||| | | |||||||| || || || ||||| || ||| Sbjct 804259 CAGAATTAGCAAATAAAGTGGACATGGTTTGGATAGCGGGAGGCAGTTCTGTTCATAAGG 804200 Query 2495 AGAGCAT-TACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTT 2553 | ||| ||||| | || | | | || ||| | ||||||||| ||| || || Sbjct 804199 AAGCCATGAACAAG-CCAGGCCATCTTAGACTATTTGTGACAAGGATTACGCAGGAACTT 804141 Query 2554 GAATGTGATA-CATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATT 2612 ||| |||| | | || | ||||||| | || | | ||||| || | |||| Sbjct 804140 GAAAGTGACATTTTTTTTTCAAGAAATTGA--TTTGGAGAAACAAAATTCTGCCAGAATA 804083 Query 2613 TCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATA 2672 |||||||||| |||| || || || || || || |||| ||||||||||| |||| Sbjct 804082 CCCAGGTGTTCTTTCTGATGTCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTATA 804023 Query 2673 TGaaaaaaa 2681 ||| || || Sbjct 804022 TGAGAAGAA 804014 >seq393 Length=1466730 Score = 159 bits (176), Expect = 3e-34 Identities = 361/534 (68%), Gaps = 23/534 (4%) Strand=Plus/Minus Query 2155 GCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAA 2214 ||||| ||| | || | |||||| | || || || | |||| ||||| | | | Sbjct 307085 GCTGTGTCTCAGAACAGGGGCATCAGCAAGAACGGGGACGTGCCGTGGCCCTCATTCAGG 307026 Query 2215 AATGAATTTAAACATTTTCAAAAAATGACATCTTCTTCCACTGACTTA---AAACAGAAT 2271 ||||| || || |||| |||| |||||| | || ||| | | | ||||||||| Sbjct 307025 AATGAGTTCAAGTATTTCCAAAGAATGACCACATCCTCCTCAGTAGAAGGTAAACAGAAT 306966 Query 2272 GTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCAGGCCTTTGAAC 2331 | || |||||||| || ||||||||||| || ||||| || | | ||||| || Sbjct 306965 TTGGTGATTATGGGTAGGAAGACATGGTTCTCTATTCCCGAGAAGAATCGACCTTTAAAG 306906 Query 2332 AACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACTTT 2391 ||||||| || | || ||| ||| ||||| | || || |||| | ||||| ||| Sbjct 306905 GACAGAATTGATTTAGTGCTC---AGAGACCTTGAGGAACCCCCAC--GAAGCTCATTTT 306851 Query 2392 GTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAG-GACCAGAATTAAAAGACAG 2450 |||| |||||| | ||| | || || ||| | | || |||||||||| | | | Sbjct 306850 CTTGCCAAAAGTCTGGATGATGC-CTTAAAAGTTTTTGAGCCACCAGAATTAGCAAATAA 306792 Query 2451 GGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCAT-TACAAGAT 2509 ||||| | | |||||||| | || | || ||||| ||| |||| ||| ||||| Sbjct 306791 AGTGGACATGGTTTGGATAGTGGGAGTCAGTTCTGTTTATAAGGAAGCCATGAACAAG-C 306733 Query 2510 CTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATAC--ATA 2567 | || | | | || ||| | ||||||||| |||| |||||||| |||| || | Sbjct 306732 CAGGCCACCTTAGACTATTTGTGACAAGGATTGTGCAGGAATTTGAAAGTGACACGTTTT 306673 Query 2568 CTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTC 2627 || |||||||||||| | |||| || ||||| | |||||||||| || Sbjct 306672 TTTTCCAGAAATTAATTTGGAGAAAT---AAAAACTT------CTCCCAGGTGTTCTTTC 306622 Query 2628 TGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaaa 2681 || || || || || | || |||| |||||||||||| ||||||| || || Sbjct 306621 TGATGTCCAGGAGGAGGAAGGCATTAAATACAAATTTGAAGTATATGAGAAGAA 306568 >seq12 Length=8214359 Score = 125 bits (138), Expect = 6e-24 Identities = 277/415 (67%), Gaps = 24/415 (6%) Strand=Plus/Minus Query 2267 AGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCAGGCCTT 2326 ||||| |||| |||| ||| || || ||||| | || |||||| || | ||| |||| Sbjct 5092625 AGAATTTTGTGATTACGGGTAGGAAAACATGACTCTCTCTTCCCTAGAAGAACAGACCTT 5092566 Query 2327 TGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTC 2386 || | ||||||| || |||||||||||||| || || || || ||| || |||| Sbjct 5092565 TGGAGGACAGAATTAACTCAGTTCTCAGTAGACAACTCAAGGAACCTCCAAAAGGCGCTC 5092506 Query 2387 ACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAATTAAAAG 2446 | ||| | || |||||| | || | || | || |||| | | ||||||||||| | Sbjct 5092505 ATTTTCTAGCCAAAAGTCTGCATGATGCCTTAAAACTTATTAAACAACCAGAATTAACAA 5092446 Query 2447 ACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATTACAA 2506 | | ||| || | | |||||||| | || || || ||||| ||| |||| ||| || Sbjct 5092445 AGAAGGTAGACATGGTTTGGATAGTGGGAGGCAGTTCTGTTTATAAGGA-AGC----CA- 5092392 Query 2507 GATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACAT 2566 ||||| | || |||| ||| || |||||| || | |||| Sbjct 5092391 -------CAAAC--AAGC---------CAAGCCATCTCAAACTCTTTGAAAGTAACACAT 5092350 Query 2567 ACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCT 2626 || ||||||||| || | | ||| || | ||| | |||| ||| |||||| | Sbjct 5092349 TTTTTCCAGAAATTGATTTGGGGATATATAAGCTTCTTCCAGAATACCCAAGTGTTCTTT 5092290 Query 2627 CTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaaa 2681 ||| || || || ||||| || |||| || |||||||| |||| |||| || Sbjct 5092289 CTGGTGTCCAGGAGGAAAAAGGCATTAAGTAGAAATTTGAAGTATACAAAAAGAA 5092235 >seq79 Length=5172123 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||| | || || || ||||||||| Sbjct 2523530 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATCGTGGCCTTCTTTGAG 2523471 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 2523470 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 2523411 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || || ||||||||| || Sbjct 2523410 ATCGCTCTGTGGATGACTGA 2523391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414457134759652