Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq314 127 2e-24 seq85 118 9e-22 seq199 105 6e-18 seq128 98.7 9e-16 seq230 89.7 4e-13 seq2164 87.8 2e-12 >seq314 Length=2398313 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | |||||| || || ||| |||||| || |||||||| || | || || || | Sbjct 2323433 GCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGGCC 2323492 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||||||||||||||| || |||||||||||||| | || | || ||| || Sbjct 2323493 ATCTTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTT 2323552 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| |||||| ||||| || | | || || || | ||| || || | ||||| Sbjct 2323553 GTCTTGGATTTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCGACCTCGAGGGTGAT 2323612 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || |||||||| || || |||||||| ||||||| Sbjct 2323613 GGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATCT 2323650 >seq85 Length=4131313 Score = 118 bits (130), Expect = 9e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | |||||| || || ||| |||||| || |||||||| || | || || || | Sbjct 1818195 GCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGGCC 1818254 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||||||||||||||| || |||||||||||||| | || | || ||| || Sbjct 1818255 ATCTTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTT 1818314 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| |||||| ||||| || | | | || || | ||| || || | ||||| Sbjct 1818315 GTCTTGGATTTTGGCTTTGACATTCTCAATAGCGTCACTGGGCTCGACCTCGAGGGTGAT 1818374 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || || ||||| || || |||||||| ||||||| Sbjct 1818375 GGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATCT 1818412 >seq199 Length=3010087 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | |||||| || || ||| |||||| || |||||||| || | | || || | Sbjct 689112 GCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACCGAGTACGGCC 689053 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||||||||||||||| | |||| ||||||||| | || | || ||| || Sbjct 689052 ATCTTCCAGCTGTTTGCCCGCAAAAGTCAGACTCTGCTGGTCAGGCGGGATGCCCTCCTT 688993 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| |||||| ||||| || | || || || | ||| || || | ||||| Sbjct 688992 GTCTTGGATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACCTCGAGGGTGAT 688933 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || |||||||| || || ||| |||| ||||||| Sbjct 688932 GGTCTTGCCCGTCAGGGTCTTCACAGAGATCTGCATCT 688895 >seq128 Length=2980057 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| |||||| || |||||||| || | || || || | || | Sbjct 204320 CACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGGCCATCTTT 204379 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||||||||||||||| || ||| |||||||||| | || | || ||| ||||| Sbjct 204380 CAGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 204439 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 |||||| ||||| || | | || || || | ||| || || | ||| || | Sbjct 204440 GATTTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTG--ACGGTC 204497 Query 39255 TC-CCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || || |||| || || |||||||| ||||||| Sbjct 204498 TCGCCTTCAGGGTCTTCACAAAGATCTGCATCT 204530 >seq230 Length=4445898 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39078 CAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAG 39137 ||| || || ||| |||||| || ||||||| || | || || || |||| || || Sbjct 2146126 CAAGTGCAGGGTGGACTCTTTCTGGCTATTATAGTCTGACAGAGTACGGCCGTCTTCCAG 2146067 Query 39138 CTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGAT 39197 | ||||||||||||| || |||| || |||||| | || | || ||| | ||| ||| Sbjct 2146066 CCGTTTGCCCGCAAAAATCAGACACTACTGGTCAGGCGGGATGCCCTCCTGGTCTTGGAT 2146007 Query 39198 TTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCC 39257 ||| ||||| || | || || || | | | || | | ||||| | || || Sbjct 2146006 TTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCGCGACCTTGAGGGTGATGGTCTTGCC 2145947 Query 39258 CGTCAGCGTTTTAACAAAGATTTGCATCT 39286 |||||| || || |||||||| ||||||| Sbjct 2145946 CGTCAGGGTCTTCACAAAGATCTGCATCT 2145918 >seq2164 Length=79412 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | |||||| || || ||| ||||| || ||||||| || | || || | | Sbjct 52114 GCGAAGCACCAAGTGCAGGGTGGAGTCTTTCTGGATATTATCGTCTGACAGAGTATGGCC 52055 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 | || |||||||||||| |||| || |||||||||||||| | || | | ||| || Sbjct 52054 ATTTTCCAGCTGTTTGCCCACAAAAATCAGACGCTGCTGGTCAGGCGGGATACCCTCCTT 51995 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| |||||| ||||| || | || || || | ||| || | | ||||| Sbjct 51994 GTCTTGGATTTTGGCTTTGACATTCTCAGTAGTGTCACTGGGCTCGACCTTGAGGGTGAT 51935 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || |||||||| || || |||||||| ||| ||| Sbjct 51934 GGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCGTCT 51897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429525219806309