Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1020 318 5e-82 seq1832 192 5e-44 seq417 188 6e-43 seq2141 109 5e-19 seq158 89.7 4e-13 seq148 86.0 5e-12 >seq1020 Length=850931 Score = 318 bits (352), Expect = 5e-82 Identities = 598/876 (68%), Gaps = 11/876 (1%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || |||||| ||||| ||| || ||| ||||| || ||||| | |||||||| ||| Sbjct 339044 TGATATTCGCCTACTCTCTTCTCAAAG---TTAGTCTTCCCTTCCAGTGAAATATTCTCC 338988 Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAAT 4379 ||||| ||||| ||||| | | || || || || | ||| | | | | | Sbjct 338987 ATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCAAAACCTAGCTCCAGCATAAGT 338928 Query 4380 CGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTC 4439 ||||| || || || || |||||||| |||| | | ||| || || ||||| | || Sbjct 338927 CGGTCTGCCACGAACTCAATATACTGCTTCATTAATGTGCAATTCATCCCAATGAGCTTC 338868 Query 4440 ACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCT 4499 ||||| | || | || | ||||| || ||||| ||||| | | ||||| || Sbjct 338867 ACAGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCGAACGGCATTAATAATTATTTCC 338808 Query 4500 TTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCA 4559 || | | | | | || ||||| | || | || | |||| | || ||||| ||| Sbjct 338807 TTCACTCTCTGCTCGGAAGGTTTGTGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTCA 338748 Query 4560 CAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAA 4619 || || ||||| || ||||||||| | ||||| || ||||| | | || ||||| | Sbjct 338747 CAGTGTAAACCCTCATCTCTGCTAGTAAGTTCATTGGAAAAGGCGAGGCCAGGCATCAGG 338688 Query 4620 CCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACG 4679 || | || || ||||| ||||| | ||||| || |||||||||| || ||||| || Sbjct 338687 CCACGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAGGATTCCTTCCACA 338628 Query 4680 GCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAAT 4739 || ||||| || || | || |||| | | | ||||||| | |||| | || Sbjct 338627 GCAGCAAAAGCCACAACCCGTTCCCCGTAGGTACCCTCTTTGTCCCCAGTCCAATGCAAG 338568 Query 4740 GCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA---ATTTA 4796 ||||| | || || ||||| || || || ||||| | || ||||| || | ||| Sbjct 338567 GCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCGATGGCGTTGAAGAGAAATTCC 338508 Query 4797 CTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATG 4855 |||| || ||| |||| |||||||||||| | || || || ||||| |||||||| Sbjct 338507 CTTTCTT----TGGAATCTTTAATATAAGTGTCAGTGAGGAGACTGTACATCTCAGAATG 338452 Query 4856 TATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || ||||| || |||| || || | || || || | |||||||| | |||||||| Sbjct 338451 GATGTTTTCCATGGCAAATTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 338392 Query 4916 GTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGC 4975 | | ||| | || || |||||||| ||||| || || ||||| |||||||| || || Sbjct 338391 TTGGCTAAACCGCTCCACCAAGTTTTCATTTACGATGCCATCACTCGCTGCAAAGAAAGC 338332 Query 4976 CAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATC 5035 || ||| || ||||||||||| || |||||||| || || |||||| | | || Sbjct 338331 CAGAACGTGGGATATAAAGTATCTCTCCTCAGGCTTCAGGGATTCCCAGTGCTGAATGTC 338272 Query 5036 TTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGA 5095 || | | ||| || | |||| | |||||||| || || || ||||| || ||| | Sbjct 338271 CTTGGAAAGATCCACCTTTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACCTCTG 338212 Query 5096 CCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 |||||||||| |||| || || | |||||||| Sbjct 338211 CCAAATATCACAGTACTCGATGGGGAAGATGACAAA 338176 >seq1832 Length=302895 Score = 192 bits (212), Expect = 5e-44 Identities = 575/875 (66%), Gaps = 27/875 (3%) Strand=Plus/Plus Query 4273 CTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACG 4332 ||| ||| || |||| ||||| || ||||| | |||||||| ||||||| ||||| | Sbjct 206478 CTCTCTTCTCAAAGAGGTTAGTCTTCCCTTCCAGTGAAATATTCTCCATAAGGTCAAATG 206537 Query 4333 GATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGC-TAC--AAGCAATCGGTCAGCTA 4389 |||| | | || || || | | ||| | | | ||| || ||| || | Sbjct 206538 GATTTTCTACTCTGGAAACCTTGCTAAAACCTAGTTCCTGCCTAAG---TCAGTCTGCCA 206594 Query 4390 CAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCG 4449 ||||| |||||||| | || | ||| || || ||||| | ||| || | | Sbjct 206595 TGAATTCAATATACTGCTTTATTAACATGCAATTCATCCCAATGAGCTTCAGCGGCAAGG 206654 Query 4450 CGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTAT 4509 | | || | ||||| || ||||| | ||||||| | ||||| || || | | | | Sbjct 206655 CCTCTGGGAGGAACTCCTGGTCTATCCTAACGGCTTTGATAATTATTTCCTTCACTCTCT 206714 Query 4510 CTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAAC 4569 | || ||||||| || | || | |||| | | ||||| |||| || |||| Sbjct 206715 GCTCTGAAGGTTTATGGACCAGGTGTTTGAACATCAGGTAGGCAAAGTCACGGTGTAAAC 206774 Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAAC-GTTAATCCGGGCATTAAACCTCTCTTT 4628 | || ||||||||||| || || || |||||| || | || ||||| | | | || Sbjct 206775 CCTCATCTCTGCTAATAAGCTCATTGGAAAACAGTGAGGCCAGGCATCAGGCTGCATTTC 206834 Query 4629 TTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAAC 4688 || ||||| |||| ||| | || ||| ||||| | || ||||| ||| ||||| Sbjct 206835 TTGAGCCAGTATATCAACGCAGAAGAACCAAAAAAGGAGATTCCTTCCGTGGCAGCAAAG 206894 Query 4689 GCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTT 4747 | || | | |||| | | ||| ||||||| || ||| | || ||||| || Sbjct 206895 TCCACAACCCATTCCCCGTAGGTAGCCT-CTTTGTCCCCAACCCAATGCAAGGCCCAATT 206953 Query 4748 AGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA---ATTTACTTTTTTC 4804 || || ||| | | || || ||||| | || | ||| || | ||| || | || Sbjct 206954 TGCCTTCTTCCTTCCACAAGGCATTGTCTCCATGGTGTTGAAGAGAAATTCCCTCTCTT- 207012 Query 4805 AAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTT 4863 ||| |||| ||||||||||| | || || ||| |||| |||||||| || |||| Sbjct 207013 ---TGGAATCTT--ATATAAGTGTCAGTGAGGAGACTACACATCTCAGAATGGATGTTTT 207067 Query 4864 CTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAA 4923 | || ||||| || || || || || || | |||||||| | ||||| || | | | Sbjct 207068 CCATGGCAATTTGGAAGCCATAGAAACAGCAGGCTTCTGTCATCTGAACCTCTTGGCCAC 207127 Query 4924 ATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACAT 4983 | | || || |||||||| |||||||| || |||| || |||| || |||| ||| | Sbjct 207128 ACCACTCCACCAAGTTTTCATTTACTATGCCAACACTTGCCACAAAGAAAGCCAGAACGT 207187 Query 4984 GA------GATATAAAGTACTGT-TCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCT 5036 || | |||||| | || | || |||||||| || || |||||| | | || Sbjct 207188 GAACGTGGGGTATAAAAT-CTCTCTCCTCAGGCTTCAGGGATTCCCAGTGCTGAATGTCC 207246 Query 5037 TTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGAC 5096 || | | || || |||| | | |||||||| || || || ||||| || |||| | Sbjct 207247 TTGGAAAGATTCACCTCTTTAGCTGTCCAAAAAGAAGCCTCAGCTTTCTTACACATCTGC 207306 Query 5097 CAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 |||| |||| |||||| || || | |||| ||| Sbjct 207307 CAAAGATCATGATACTCCATAGGGAAGATGAGAAA 207341 >seq417 Length=2207251 Score = 188 bits (208), Expect = 6e-43 Identities = 457/687 (67%), Gaps = 9/687 (1%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || ||| ||||| ||| | ||||| ||||| || ||||| | |||||||| ||| Sbjct 863680 TGATACTCGCCTACTCTCTTCACAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCC 863739 Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAAT 4379 ||| | ||||| ||||| | | | || || || | ||| | | | | | Sbjct 863740 ATATAGTCAAATGGATTTTCTACTCCGAAAACCTTGCCAAAACCTAGCTCCAGCATAAGT 863799 Query 4380 CGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTC 4439 ||||| || || || || |||||||| |||| | ||| || || ||||| || || Sbjct 863800 CGGTCTGCCACGAACTCAATATACTGCTTCATTAACATGCAATTCATCCCAATGAACTTC 863859 Query 4440 ACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCT 4499 | || | || | | | || | || ||||| ||||| | | ||||| || Sbjct 863860 ATGGGCAAGGCCTCCTTGATGAATCCCTGCTCTATCTGAACGGCATTAATAATTATTTCC 863919 Query 4500 TTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCA 4559 || | | | | || ||||| | || | || | |||| | || ||||| ||| Sbjct 863920 TTCACTCCCTGCTCGGAAGGTTTGTGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTCA 863979 Query 4560 CAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAA 4619 || || ||||| || ||||||||||| ||||| || |||||||| | || ||||| | Sbjct 863980 CAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGG 864039 Query 4620 CCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACG 4679 | | || || ||||| ||||| | |||| || ||||||||||| || ||||| || Sbjct 864040 CTGCGTTTCTTGAGCCAGAATATCGACTCAAAAGAACCAGAAAAGAAGATTCCTTCCACA 864099 Query 4680 GCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAA 4738 || ||||| | || | || |||| | | ||| ||||||| ||||| || Sbjct 864100 GCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGC-CTCTTTGTCCCCGATCCAACGCAA 864158 Query 4739 TGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA---TAATTT 4795 |||||| || | ||||| || || || ||||| | || ||||| || |||| Sbjct 864159 GGCCCAGGCTGCCTCCTTCTTTACACAAGGCATTGTCTCCATGGCGTTGAAGAGAAATTC 864218 Query 4796 ACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATG 4855 |||| ||| | |||| ||| |||||||| || || || |||||||| |||||||| Sbjct 864219 CCTTTCTTC---GGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATCTCAGAATG 864275 Query 4856 TATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || ||||| || | ||| || || || || || || | |||||||| | |||||||| Sbjct 864276 AATGTTTTCCATGGTAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 864335 Query 4916 GTTACAAAATCTTTCTACTAAGTTTTC 4942 || | || | || || |||||||| Sbjct 864336 -TTGCTTAACCGCTCCACCAAGTTTTC 864361 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 4932 ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATA 4991 || ||| |||| ||||| || ||| |||| | ||||| || |||| |||||| |||||| Sbjct 864546 ACCAAGCTTTCATTTACCATGCCGGCACTCGGCGCAAAGAAAGCCAGAACATGGGATATA 864605 Query 4992 AAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACT 5051 ||||| || |||||||| || || || | | | || || | | ||| ||| Sbjct 864606 AAGTATCTCTCCTCAGGCTTCAGGGATTCCCGCGGCTGAATGTCCTTGGAAAGATCCACT 864665 Query 5052 TCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATAC 5111 |||||| | |||||||| || || || ||||| || ||||| |||||||||| | ||| Sbjct 864666 TCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTAC 864725 Query 5112 TGAATCGGAAGTATGACAAA 5131 | || || | |||||||| Sbjct 864726 TCGATAGGGAAGATGACAAA 864745 >seq2141 Length=56954 Score = 109 bits (120), Expect = 5e-19 Identities = 160/223 (72%), Gaps = 9/223 (4%) Strand=Plus/Minus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAG- 31823 ||| || || ||||| || ||||| | || | ||||| |||||||| ||| || ||| Sbjct 38917 AGCCCTTGTGAAAACGGACATTCAGGTAGCTCTTCCTTCTGGGTGCTATGGAAGAGTAGT 38858 Query 31824 --CTCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGA 31881 |||| | ||||| ||||| | |||||||| ||||| | || || || || ||||| Sbjct 38857 AGCTCCCCGTTCTGGCTTGGCTGCAAAACACTTCATCGATATAGGAGCTGGCGTCATAGA 38798 Query 31882 TTCAGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATA 31938 | |||||| |||||||| || || | || | ||||||||||| ||| || | | Sbjct 38797 TGAAGACTACAGAGGAAATGTGGGTGTCGTACTATTTAATTTTGGCAAAGAGAAGT--TT 38740 Query 31939 CAGTATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 || | |||||||||||| || | || || || ||||| ||| Sbjct 38739 CA-AGTCAAAAAGGGCGATCGGATTGCACAGCTCATTTGTGAA 38698 >seq158 Length=7371824 Score = 89.7 bits (98), Expect = 4e-13 Identities = 98/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| || || || || ||||||||||||||||| || || | Sbjct 3458705 AAAATCTT---ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATA 3458649 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| ||||| |||| || || | ||||| || |||||||| || | ||| || | Sbjct 3458648 TGTGAGAGATAAAATACTTCTCATCCGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 3458589 Query 5041 TTAAATCAAC 5050 ||| ||||| Sbjct 3458588 ATAAGTCAAC 3458579 >seq148 Length=4816872 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || ||||| || | || ||||| | || | || || Sbjct 2362151 TCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGGCCGCGTTTCTTG 2362210 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || ||||| || || ||||| || Sbjct 2362211 AGCCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCC 2362270 Query 4692 AC 4693 || Sbjct 2362271 AC 2362272 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| |||||||||||| || || || || ||||| |||||||| || ||||| || ||| Sbjct 2364181 TCTTTAATATAAGTGTCAATGAGGAGACTGTACATCTCAGAATGGATGTTTTCCATGGCA 2364240 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || || | |||||||| | |||||||| Sbjct 2364241 ATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 2364284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427029338231369