Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq15438 455 2e-123 seq5825 313 2e-80 seq2536 219 3e-52 seq9036 168 5e-37 seq12394 123 2e-23 >seq15438 Length=947670 Score = 455 bits (504), Expect = 2e-123 Identities = 434/554 (78%), Gaps = 1/554 (0%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||||||||||||||||||||||| | ||| || || || |||| Sbjct 269096 ATTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTTTCCTCCTGGACAT 269155 Query 4028 TAGAAAG-AACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGA 4086 | | ||||| ||| |||||| | |||||| ||||| || | ||||| |||||| Sbjct 269156 CCAAGGGGAACACCTGGGTATTCTGGAAGAAGTTTATATTTTTCAAAATCAATTTCTGGG 269215 Query 4087 AAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCAT 4146 |||| || |||| |||||| |||||||||||||| |||||||| ||| |||||| || | Sbjct 269216 GAAAACGTATCACTTTCAAATTCTTGCATGATCCTTGTCACAAATAGTCTAAGATGGCCT 269275 Query 4147 GGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACT 4206 || | |||| ||||| ||||| |||||||| ||||| | |||||| |||| ||||||| Sbjct 269276 GGCTTGTTCATGGCTTCCTTATAAACAGAACTGCCTCCCACTATCCAAACCACGTCTACT 269335 Query 4207 TTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAA 4266 ||||||| ||||||||| | ||| |||||| ||| |||||||| | ||| || || | | Sbjct 269336 TTATTTGTTAATTCTGGATCTTCAATAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGA 269395 Query 4267 AAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCT 4326 |||||||||| | |||| | ||||| ||||| | |||||||| | | |||||||| | Sbjct 269396 AAATGAGCTCCCTTTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATACTAATTCTGTCC 269455 Query 4327 TTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAA 4386 |||||||| || |||||||| ||||| |||||||| ||||| ||||||||||||| || Sbjct 269456 TTTAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCGAA 269515 Query 4387 TTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTC 4446 |||||| || || ||| ||||| ||||||||||||||||||| | || ||||| Sbjct 269516 TTCTGTCTACCTTCTACTGAAGACACTGTAGTCATTCTTTGGAAATACCTGAATTCATTT 269575 Query 4447 ATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCA 4506 | ||| ||| | |||| ||| || | ||||| |||| |||||| || | ||||| Sbjct 269576 CTGAGTGGAGGCTAGGGCAGGTTCCCGTTCTTGCCGATGCTCATGTTCTGGGACACAGCG 269635 Query 4507 ACAATGCAGTTTAG 4520 || ||||||||||| Sbjct 269636 ACGATGCAGTTTAG 269649 >seq5825 Length=455940 Score = 313 bits (346), Expect = 2e-80 Identities = 329/431 (76%), Gaps = 4/431 (1%) Strand=Plus/Plus Query 3979 TTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGAACA 4038 || || |||||||||| |||||||||||| |||||| || || | ||||| ||||| Sbjct 134452 TTTTCTTATACTTCAAGTTTGTACTTAATGACTTTCTCCTCCTGGA---TAGAAGGAACA 134508 Query 4039 CTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCA 4098 | |||||||||| | |||||| | || || | |||| |||||||||||| || ||| Sbjct 134509 CCTGGATATTCTGGGAGAAGTTTATTATTTTCCAAATCATTTTCTGGAAAAAATGTATCA 134568 Query 4099 CATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATA 4158 | |||||| ||||||||||| | | |||||| | | |||||| || || | |||| Sbjct 134569 CTTTCAAATTCTTGCATGATTTTTGCCACAAATAATCTAAGATGGCCTGACTTTTTCATG 134628 Query 4159 GCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAAT 4218 ||||| ||||| | |||||| | ||| | || | |||||||||| |||||||| |||| Sbjct 134629 GCTTCCTTATATATAGAACTGCTTCCTGCTTTCAA-ACCATGTCTAGTTTATTTGTTAAT 134687 Query 4219 TCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTA 4278 |||| || | | |||||| ||| |||||||| | ||| || || | ||||||| ||| Sbjct 134688 GCTGGTTGCTTGATAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGAAAATGACCTCCC 134747 Query 4279 TGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGG 4338 | |||| | ||||| ||||| | ||| || | |||||||||| |||| |||| || Sbjct 134748 TATGGAGGTTCCTTGAGTTCTCTATTGATAATTATATTAATTCTGTCTTTGAAAGATCGA 134807 Query 4339 TTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 |||||||| ||||| |||||| ||||| ||||||||||||| ||||||||||||||| Sbjct 134808 TTCTTCTCTGGAATGTTGAACCACATCTTTCTACCCATAATCACCAAATTCTGTTTATCT 134867 Query 4399 GGTACAGAAGA 4409 ||| ||||| Sbjct 134868 TCTACTGAAGA 134878 >seq2536 Length=547780 Score = 219 bits (242), Expect = 3e-52 Identities = 195/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||||||||| ||||||||||||| | ||| || || || |||| Sbjct 478068 ATTAATTGTTCTTTTCATATACTTCAGATTTGTACTTAATGCCTTTTTCCTCCTGGACAT 478009 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 |||| |||||| |||||||||| | |||||| ||||| || | ||||| ||||||| Sbjct 478008 CAGAAGGAACACATGGATATTCTGGGAGAAGTTTATATTTTTCCAAATCAATTTCTGGAC 477949 Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147 |||| || |||| || ||| ||||||||| |||| |||||||| ||| |||||| || || Sbjct 477948 AAAATGTATCACTTTTAAATTCTTGCATGGTCCTTGTCACAAATAGTCTAAGATGGCCTG 477889 Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207 | | | || | ||| || | |||||||| ||||| | |||||| ||||||||||||| Sbjct 477888 GCTTGTTTATGGATTCCTTGCAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACTT 477829 Query 4208 TATT 4211 |||| Sbjct 477828 TATT 477825 Score = 116 bits (128), Expect = 3e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||||||||| ||||||||||||| | ||| || || || |||| Sbjct 479728 ATTAATTGTTCTTTTCATATACTTCAGATTTGTACTTAATGCCTTTTTCCTCCTGGACAT 479669 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGA 4086 |||| |||||| |||||||||| | |||||| ||||| || | ||||| ||||||| Sbjct 479668 CAGAAGGAACACATGGATATTCTGGGAGAAGTTTATATTTTTCCAAATCAATTTCTGGA 479610 >seq9036 Length=379113 Score = 168 bits (186), Expect = 5e-37 Identities = 185/246 (75%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 26927 AGATAGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCAC 26986 ||| |||| ||| | || | | | |||||||| || || || |||||||| |||| ||| Sbjct 94772 AGAAAGCTCTTAAGCCACGTGGCGGACAATGGGGGTGACACAGGTGCAGCCCACAGCCAC 94831 Query 26987 TAGCATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAG 27046 ||||||||||| |||| || || | ||||||| | || || | | |||| || || Sbjct 94832 CAGCATCTTCTCCAGCCGGAAGGAGTGAGGGCAGTGCCGAGGCTCCCTTCGCAGGACCAG 94891 Query 27047 AATCTCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAAC 27106 |||||||| ||||| | ||| ||||||||||| | || || ||||| |||||||| | Sbjct 94892 GATCTCTTGCTGGATGGTGACAGAGTTCATGTGATGATCCACCTTCCCTTCAGCATTGAT 94951 Query 27107 ACATCCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTC 27166 ||| ||| ||| || ||||| || ||||| ||||||||||| || || || | || || Sbjct 94952 ACAGCCTGAGTGGCTGCACTTGGCCTCCCAGATCACAGAGGGGTACCTCTCAGGGTCCTC 95011 Query 27167 ATTGCG 27172 |||||| Sbjct 95012 ATTGCG 95017 >seq12394 Length=926646 Score = 123 bits (136), Expect = 2e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | |||||| ||||||||||||||||||| ||||||||| Sbjct 214059 TTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACTTTATTTGTTAATTCTGGA 214118 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 | ||| |||||| ||| |||||||| | ||| || || | ||||||||||| | |||| Sbjct 214119 TCTTCAATAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCCTTTGGA 214178 Query 4285 AGCTCC 4290 | ||| Sbjct 214179 GGTTCC 214184 Score = 120 bits (132), Expect = 2e-22 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| | |||||||| || |||||||| || Sbjct 217628 CTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGG 217687 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| ||||| ||||||||||||| |||||||||||| || Sbjct 217688 AATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 217736 Score = 113 bits (124), Expect = 3e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| ||||| || | ||||| |||||| ||||| || |||| |||||| |||||||| Sbjct 211441 AAGTTTATATTTTTCAAAATCAATTTCTGGGAAAAACGTATCACTTTCAAATTCTTGCAT 211500 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175 |||||| |||||||| ||| |||||| || ||| | |||| ||||| || | ||||| Sbjct 211501 GATCCTTGTCACAAATAGTCTAAGATGGCCTGGCTTGTTCATGGCTTCCTTTGAAACAGA 211560 Query 4176 AC 4177 || Sbjct 211561 AC 211562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361176238795526