Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq15438 455 2e-123
seq5825 313 2e-80
seq2536 219 3e-52
seq9036 168 5e-37
seq12394 123 2e-23
>seq15438
Length=947670
Score = 455 bits (504), Expect = 2e-123
Identities = 434/554 (78%), Gaps = 1/554 (0%)
Strand=Plus/Plus
Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027
|||||| ||||| |||||||||||||||||||||||||| | ||| || || || ||||
Sbjct 269096 ATTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTTTCCTCCTGGACAT 269155
Query 4028 TAGAAAG-AACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGA 4086
| | ||||| ||| |||||| | |||||| ||||| || | ||||| ||||||
Sbjct 269156 CCAAGGGGAACACCTGGGTATTCTGGAAGAAGTTTATATTTTTCAAAATCAATTTCTGGG 269215
Query 4087 AAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCAT 4146
|||| || |||| |||||| |||||||||||||| |||||||| ||| |||||| || |
Sbjct 269216 GAAAACGTATCACTTTCAAATTCTTGCATGATCCTTGTCACAAATAGTCTAAGATGGCCT 269275
Query 4147 GGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACT 4206
|| | |||| ||||| ||||| |||||||| ||||| | |||||| |||| |||||||
Sbjct 269276 GGCTTGTTCATGGCTTCCTTATAAACAGAACTGCCTCCCACTATCCAAACCACGTCTACT 269335
Query 4207 TTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAA 4266
||||||| ||||||||| | ||| |||||| ||| |||||||| | ||| || || | |
Sbjct 269336 TTATTTGTTAATTCTGGATCTTCAATAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGA 269395
Query 4267 AAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCT 4326
|||||||||| | |||| | ||||| ||||| | |||||||| | | |||||||| |
Sbjct 269396 AAATGAGCTCCCTTTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATACTAATTCTGTCC 269455
Query 4327 TTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAA 4386
|||||||| || |||||||| ||||| |||||||| ||||| ||||||||||||| ||
Sbjct 269456 TTTAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCGAA 269515
Query 4387 TTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTC 4446
|||||| || || ||| ||||| ||||||||||||||||||| | || |||||
Sbjct 269516 TTCTGTCTACCTTCTACTGAAGACACTGTAGTCATTCTTTGGAAATACCTGAATTCATTT 269575
Query 4447 ATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCA 4506
| ||| ||| | |||| ||| || | ||||| |||| |||||| || | |||||
Sbjct 269576 CTGAGTGGAGGCTAGGGCAGGTTCCCGTTCTTGCCGATGCTCATGTTCTGGGACACAGCG 269635
Query 4507 ACAATGCAGTTTAG 4520
|| |||||||||||
Sbjct 269636 ACGATGCAGTTTAG 269649
>seq5825
Length=455940
Score = 313 bits (346), Expect = 2e-80
Identities = 329/431 (76%), Gaps = 4/431 (1%)
Strand=Plus/Plus
Query 3979 TTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGAACA 4038
|| || |||||||||| |||||||||||| |||||| || || | ||||| |||||
Sbjct 134452 TTTTCTTATACTTCAAGTTTGTACTTAATGACTTTCTCCTCCTGGA---TAGAAGGAACA 134508
Query 4039 CTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCA 4098
| |||||||||| | |||||| | || || | |||| |||||||||||| || |||
Sbjct 134509 CCTGGATATTCTGGGAGAAGTTTATTATTTTCCAAATCATTTTCTGGAAAAAATGTATCA 134568
Query 4099 CATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATA 4158
| |||||| ||||||||||| | | |||||| | | |||||| || || | ||||
Sbjct 134569 CTTTCAAATTCTTGCATGATTTTTGCCACAAATAATCTAAGATGGCCTGACTTTTTCATG 134628
Query 4159 GCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAAT 4218
||||| ||||| | |||||| | ||| | || | |||||||||| |||||||| ||||
Sbjct 134629 GCTTCCTTATATATAGAACTGCTTCCTGCTTTCAA-ACCATGTCTAGTTTATTTGTTAAT 134687
Query 4219 TCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTA 4278
|||| || | | |||||| ||| |||||||| | ||| || || | ||||||| |||
Sbjct 134688 GCTGGTTGCTTGATAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGAAAATGACCTCCC 134747
Query 4279 TGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGG 4338
| |||| | ||||| ||||| | ||| || | |||||||||| |||| |||| ||
Sbjct 134748 TATGGAGGTTCCTTGAGTTCTCTATTGATAATTATATTAATTCTGTCTTTGAAAGATCGA 134807
Query 4339 TTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398
|||||||| ||||| |||||| ||||| ||||||||||||| |||||||||||||||
Sbjct 134808 TTCTTCTCTGGAATGTTGAACCACATCTTTCTACCCATAATCACCAAATTCTGTTTATCT 134867
Query 4399 GGTACAGAAGA 4409
||| |||||
Sbjct 134868 TCTACTGAAGA 134878
>seq2536
Length=547780
Score = 219 bits (242), Expect = 3e-52
Identities = 195/244 (80%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027
|||||| ||||| |||||||||||| ||||||||||||| | ||| || || || ||||
Sbjct 478068 ATTAATTGTTCTTTTCATATACTTCAGATTTGTACTTAATGCCTTTTTCCTCCTGGACAT 478009
Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087
|||| |||||| |||||||||| | |||||| ||||| || | ||||| |||||||
Sbjct 478008 CAGAAGGAACACATGGATATTCTGGGAGAAGTTTATATTTTTCCAAATCAATTTCTGGAC 477949
Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147
|||| || |||| || ||| ||||||||| |||| |||||||| ||| |||||| || ||
Sbjct 477948 AAAATGTATCACTTTTAAATTCTTGCATGGTCCTTGTCACAAATAGTCTAAGATGGCCTG 477889
Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207
| | | || | ||| || | |||||||| ||||| | |||||| |||||||||||||
Sbjct 477888 GCTTGTTTATGGATTCCTTGCAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACTT 477829
Query 4208 TATT 4211
||||
Sbjct 477828 TATT 477825
Score = 116 bits (128), Expect = 3e-21
Identities = 97/119 (82%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027
|||||| ||||| |||||||||||| ||||||||||||| | ||| || || || ||||
Sbjct 479728 ATTAATTGTTCTTTTCATATACTTCAGATTTGTACTTAATGCCTTTTTCCTCCTGGACAT 479669
Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGA 4086
|||| |||||| |||||||||| | |||||| ||||| || | ||||| |||||||
Sbjct 479668 CAGAAGGAACACATGGATATTCTGGGAGAAGTTTATATTTTTCCAAATCAATTTCTGGA 479610
>seq9036
Length=379113
Score = 168 bits (186), Expect = 5e-37
Identities = 185/246 (75%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 26927 AGATAGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCAC 26986
||| |||| ||| | || | | | |||||||| || || || |||||||| |||| |||
Sbjct 94772 AGAAAGCTCTTAAGCCACGTGGCGGACAATGGGGGTGACACAGGTGCAGCCCACAGCCAC 94831
Query 26987 TAGCATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAG 27046
||||||||||| |||| || || | ||||||| | || || | | |||| || ||
Sbjct 94832 CAGCATCTTCTCCAGCCGGAAGGAGTGAGGGCAGTGCCGAGGCTCCCTTCGCAGGACCAG 94891
Query 27047 AATCTCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAAC 27106
|||||||| ||||| | ||| ||||||||||| | || || ||||| |||||||| |
Sbjct 94892 GATCTCTTGCTGGATGGTGACAGAGTTCATGTGATGATCCACCTTCCCTTCAGCATTGAT 94951
Query 27107 ACATCCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTC 27166
||| ||| ||| || ||||| || ||||| ||||||||||| || || || | || ||
Sbjct 94952 ACAGCCTGAGTGGCTGCACTTGGCCTCCCAGATCACAGAGGGGTACCTCTCAGGGTCCTC 95011
Query 27167 ATTGCG 27172
||||||
Sbjct 95012 ATTGCG 95017
>seq12394
Length=926646
Score = 123 bits (136), Expect = 2e-23
Identities = 103/126 (82%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224
||||| |||||||| ||||| | |||||| ||||||||||||||||||| |||||||||
Sbjct 214059 TTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACTTTATTTGTTAATTCTGGA 214118
Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284
| ||| |||||| ||| |||||||| | ||| || || | ||||||||||| | ||||
Sbjct 214119 TCTTCAATAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCCTTTGGA 214178
Query 4285 AGCTCC 4290
| |||
Sbjct 214179 GGTTCC 214184
Score = 120 bits (132), Expect = 2e-22
Identities = 92/109 (84%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349
||| ||||| | |||||||| | |||||||||| | |||||||| || |||||||| ||
Sbjct 217628 CTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGG 217687
Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398
||| |||||||| ||||| ||||||||||||| |||||||||||| ||
Sbjct 217688 AATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 217736
Score = 113 bits (124), Expect = 3e-20
Identities = 98/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115
|||||| ||||| || | ||||| |||||| ||||| || |||| |||||| ||||||||
Sbjct 211441 AAGTTTATATTTTTCAAAATCAATTTCTGGGAAAAACGTATCACTTTCAAATTCTTGCAT 211500
Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175
|||||| |||||||| ||| |||||| || ||| | |||| ||||| || | |||||
Sbjct 211501 GATCCTTGTCACAAATAGTCTAAGATGGCCTGGCTTGTTCATGGCTTCCTTTGAAACAGA 211560
Query 4176 AC 4177
||
Sbjct 211561 AC 211562
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361176238795526
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