Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq5291 140 4e-28
seq6424 120 4e-22
seq11817 102 1e-16
>seq5291
Length=463539
Score = 140 bits (154), Expect = 4e-28
Identities = 113/137 (82%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209
|| ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| |
Sbjct 20686 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 20745
Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269
||||||||||||||||| || ||||||||||| ||||| ||||| || || | | ||||
Sbjct 20746 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 20805
Query 53270 CTATTTCTAAGACCGTA 53286
|| ||||| | ||| ||
Sbjct 20806 CTGTTTCTTATACCATA 20822
Score = 96.9 bits (106), Expect = 4e-15
Identities = 121/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827
|||| |||| ||| || ||||||||||| | || || ||||| || || || || || |
Sbjct 44646 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGA 44705
Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887
||||||| || || || | ||||| | || || ||| | || || | || ||| ||||
Sbjct 44706 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAAAGTATCCA 44765
Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933
||| || || || || ||| | |||| |||||||| || |||||
Sbjct 44766 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 44811
Score = 95.1 bits (104), Expect = 1e-14
Identities = 135/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447
|||| || || || || || | || || || || ||||| || || || || || || |
Sbjct 26479 CATAGGTTTCATAAGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 26538
Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507
||||||||||||| ||||||| |||||| | || || || | || ||||| || |
Sbjct 26539 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 26598
Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567
| | | |||||||| || ||||| | ||||| || ||||| ||||| || | ||| |
Sbjct 26599 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCGATGGGGCGATGGC 26658
Query 53568 TCTTATTAGA 53577
||||| ||
Sbjct 26659 GTTTATTCGA 26668
Score = 95.1 bits (104), Expect = 1e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084
|| |||||| ||||| |||||||| ||||||||||| || | || || || |||| |
Sbjct 32912 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 32971
Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144
|| || || |||||||| ||||| || | ||| |||||| | | || || |||||||
Sbjct 32972 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 33031
Query 54145 CGGTTCCAAGTATAT 54159
||||||| ||| ||
Sbjct 33032 AGGTTCCAGGTAAAT 33046
>seq6424
Length=433988
Score = 120 bits (132), Expect = 4e-22
Identities = 99/121 (82%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
|||| ||||| ||||| | ||| |||||||||||||| || ||||| || || || || |
Sbjct 17768 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 17709
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| ||||| ||||| |||||||| || || |||||||| || ||||| ||||| |||||||
Sbjct 17708 TGAGCCAGAATATTGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 17649
Query 24277 C 24277
|
Sbjct 17648 C 17648
Score = 105 bits (116), Expect = 8e-18
Identities = 87/106 (82%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454
|||||||| || || ||||| | |||||||||||||| ||||| |||||||| |||||
Sbjct 16936 ATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 16877
Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500
||||| || || |||||||| | || ||||||||||| ||||||
Sbjct 16876 AATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCT 16831
>seq11817
Length=981421
Score = 102 bits (112), Expect = 1e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218
|| ||||| || || | || |||||||| |||||||||||||| || || | || ||
Sbjct 476697 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCGGGCATGAGTCCTCTTTTCTTT 476756
Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 24277
||||| ||||| | ||||| ||||| || |||||||||||||| || || ||||||||
Sbjct 476757 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCCACAGCAGCAAAGGC 476815
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593595241200480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |