Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5291 140 4e-28 seq6424 120 4e-22 seq11817 102 1e-16 >seq5291 Length=463539 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 20686 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 20745 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 20746 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 20805 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 20806 CTGTTTCTTATACCATA 20822 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| |||| ||| || ||||||||||| | || || ||||| || || || || || | Sbjct 44646 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGA 44705 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | ||||| | || || ||| | || || | || ||| |||| Sbjct 44706 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAAAGTATCCA 44765 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 44766 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 44811 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 |||| || || || || || | || || || || ||||| || || || || || || | Sbjct 26479 CATAGGTTTCATAAGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 26538 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507 ||||||||||||| ||||||| |||||| | || || || | || ||||| || | Sbjct 26539 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 26598 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567 | | | |||||||| || ||||| | ||||| || ||||| ||||| || | ||| | Sbjct 26599 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCGATGGGGCGATGGC 26658 Query 53568 TCTTATTAGA 53577 ||||| || Sbjct 26659 GTTTATTCGA 26668 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||| ||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 32912 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 32971 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 32972 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 33031 Query 54145 CGGTTCCAAGTATAT 54159 ||||||| ||| || Sbjct 33032 AGGTTCCAGGTAAAT 33046 >seq6424 Length=433988 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| |||||||||||||| || ||||| || || || || | Sbjct 17768 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 17709 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| |||||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 17708 TGAGCCAGAATATTGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 17649 Query 24277 C 24277 | Sbjct 17648 C 17648 Score = 105 bits (116), Expect = 8e-18 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 16936 ATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 16877 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 ||||| || || |||||||| | || ||||||||||| |||||| Sbjct 16876 AATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCT 16831 >seq11817 Length=981421 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| || || | || |||||||| |||||||||||||| || || | || || Sbjct 476697 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCGGGCATGAGTCCTCTTTTCTTT 476756 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 24277 ||||| ||||| | ||||| ||||| || |||||||||||||| || || |||||||| Sbjct 476757 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCCACAGCAGCAAAGGC 476815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593595241200480