Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq10360 295 8e-75 seq6335 113 5e-20 seq10051 98.7 1e-15 >seq10360 Length=5556724 Score = 295 bits (326), Expect = 8e-75 Identities = 268/338 (79%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||||| |||||||| ||||| | | | | ||| | | ||| |||||||||||||| Sbjct 1133044 AGCAGGGTTTCGATGTCAGGCTCGATGTCGATCGTCAGAAACCGGCGGCTGTACCTGCGC 1132985 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 |||||| ||||| | ||||||| |||||||||||||||||||| |||||||||||| Sbjct 1132984 ACGGGCACACCGTCTGGGCCCACCAGGAACTTCTCGAAGTTCCAGGAGACGTCGTTGCGG 1132925 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| || ||||||| |||| || |||||| ||| ||| | | |||||| ||| Sbjct 1132924 CACACCGGGGACCAGGTGATGAACTTAGGGTCGGTCATGAGAGCAGTGGCGTCGTCACTA 1132865 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 |||| ||||| ||||| || |||||||||||||||||||| ||| | | || || ||| Sbjct 1132864 GGCGTAGGCAGAGCCTCCCGAAGGAAGGCGAAGAGCGGATGCGCCTTCTCGCCATTCACC 1132805 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||||||||| || || |||||||| ||| || || ||||||| |||| Sbjct 1132804 TCGCACTTCTCGAAGAGCATGAAATTGGGCTCGAACCCGCCGCCTGGTCGGACGTACTTC 1132745 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 ||| || || |||||| | |||| |||||||||||| Sbjct 1132744 AGGCAATTCAGGATCTCCTCGTTCTTGGCGTTTTCCTG 1132707 Score = 163 bits (180), Expect = 3e-35 Identities = 161/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| ||||| ||||| | ||| |||| Sbjct 1132446 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGCACGACCAGTCCCCGGGGTCCGAGGC 1132387 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||| || |||||||| ||||| ||||| ||||| | |||||||| || |||| Sbjct 1132386 GCCGCTGCAGGTCATTCATCTGGGTGTAGTCCCGCACCGTTGTGCCTCAGAGCGATGCTA 1132327 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 ||||||| ||||||| ||| ||| || | | || | | | | || || || |||| Sbjct 1132326 CGTTCTCAATGAGCAGCACCTTGCCTCGCAGGGAGGCCAGGTGGAAGGGCTCCCCGCCGG 1132267 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACAC 83598 | ||||| || |||||||||||||| Sbjct 1132266 CCAGAGGGCGCGCAGAGAAGGCGTACAC 1132239 >seq6335 Length=1798649 Score = 113 bits (124), Expect = 5e-20 Identities = 190/267 (71%), Gaps = 6/267 (2%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| |||||| ||| ||| | | Sbjct 1321509 GCAGCTGCGCAGCATCTACGAGAGCA-GCTTGTCCATCGGCAACTTTGCTTCGCGCCTTC 1321567 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || |||||||||| || ||| | ||||||| Sbjct 1321568 TGGTGCACCTGTTCCCGGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 1321627 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || ||||| || | | |||| |||||| Sbjct 1321628 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCATCCCGTATCAAGCTCATCCGCCACTAT 1321686 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAA-AGTTCCTGGC 50646 |||||| |||| |||| ||| || || || || |||| ||| ||||| ||| Sbjct 1321687 GTGCAGCTGCTCTACCCACGGGCCAAGAATGACCGTGTCTGGA-CACTGGAGTTCGTGGG 1321745 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCG 50673 ||||||||||||||||||||||| Sbjct 1321746 CAAACTGGACGAGCGCTGCCGGCGCCG 1321772 >seq10051 Length=112203 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/231 (70%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 83052 GGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACC 83111 |||| ||| ||||||| |||||||| | | |||||||| | ||||||||||||||| Sbjct 106713 GGGGAAGCGGGGCCTCTGCATCGGGCTCGATGTCCAGGGTCAGAAAGCGGTGGCTGTACC 106654 Query 83112 TGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTC-GAAGTTCCAGGCCACGTCG 83170 |||||| |||| || || | ||||||| || |||| | |||| || || | ||| Sbjct 106653 TGCGCAAGGGCCCACCATCCGGGCCCACCAGGAGCTTCCCGGAAGCTCTGGGTGAAGTCC 106594 Query 83171 TTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCG 83230 ||||| |||| ||| ||| | |||| | | | || || |||| | | || || Sbjct 106593 CTGCGGGACACGGGAAACCGCGAGATGAACCTGAGATCCTTCGCGAGGGCCGTGGTGGCG 106534 Query 83231 TCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCC 83281 || || ||| |||||| ||| | ||| ||| |||||| | || ||| Sbjct 106533 TCACTGGGCATGCGCAGGGGCTCGCCAAGGCCGGCAAAGAGCCGGTGCGCC 106483 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/165 (73%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 83052 GGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACC 83111 |||| ||| ||||||| | |||||||| | | |||||||| | ||||||||||||||| Sbjct 106919 GGGGAAGCGGGGCCTCTGTATCGGGCTCGATGTCCAGGGTCAGAAAGCGGTGGCTGTACC 106860 Query 83112 TGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTC-GAAGTTCCAGGCCACGTCG 83170 |||||| |||| ||||| | ||||||| || |||| | |||| || || | ||| Sbjct 106859 TGCGCAAGGGCCCACCGTCCGGGCCCACCAGGAGCTTCCCGGAAGCTCTGGGTGAAGTCC 106800 Query 83171 TTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACG 83215 || || |||| ||| ||| | |||| | ||| || ||||| Sbjct 106799 CTGTGGGACACGGGAAACCGCGAGATGAACCTGGGATCCTTCACG 106755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608667232821040