Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq7844 131 1e-25 seq15871 122 7e-23 seq6202 116 3e-21 seq9417 95.1 1e-14 seq8498 91.5 1e-13 >seq7844 Length=401405 Score = 131 bits (144), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || ||||| || || ||||| || || | | Sbjct 263133 CCCCTC--AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAA 263076 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | || |||||||| ||||| ||| | || || ||||||||||| ||| | Sbjct 263075 GAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAA 263016 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||||||||| || |||||| ||||| | ||| || |||| ||||||| | Sbjct 263015 TGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCT 262956 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 ||| ||| |||||||||||||| | || || || || ||||||||||||| Sbjct 262955 CCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTTGA 262905 Score = 113 bits (124), Expect = 4e-20 Identities = 161/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || ||||| || || ||||| || || | | Sbjct 263361 CCCCTC--AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAA 263304 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | || |||||||| ||||| ||| | || || ||||||||||| || | Sbjct 263303 GAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGAA 263244 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||||||||| || |||||| ||||| | ||| || |||| ||||||| | Sbjct 263243 TGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCT 263184 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| ||| |||||||||||||| | || || || || || ||||| Sbjct 263183 CCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 263138 >seq15871 Length=707613 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || | ||| |||| |||| ||||||||| || || ||||| ||||| | | Sbjct 26918 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 26977 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || ||||||||||| |||||| | || | ||||||||||| ||| Sbjct 26978 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGG 27037 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| || ||||| |||||| || || | ||| || |||| ||||||| Sbjct 27038 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 27097 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||| ||||| | || || || || || ||||| Sbjct 27098 TCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 27144 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| ||||||||| || || ||||| ||||| | |||||| | | || Sbjct 26705 AGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCT 26764 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 ||||||||||| |||||| | || | ||||||||||| ||| | ||| || ||||| Sbjct 26765 TCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 26824 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | ||| || |||| ||||||| |||| ||| |||||| Sbjct 26825 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 26884 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || || | || || || || || ||||| Sbjct 26885 TTACCAGTCAGGGTCTTCACGAAGATCTGCAT 26916 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || | ||| |||| |||| ||||||||| || || ||||| ||||| | | Sbjct 27146 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 27205 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || ||||||||||| |||||| | || | ||||||||||| ||| Sbjct 27206 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGG 27265 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| || || ||||| || || | ||| || |||| ||||||| Sbjct 27266 ATGCCTTCTTTTTCTTGTATCTTCCCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 27325 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| || ||||| || || || | || || ||||| || |||||| Sbjct 27326 TCCAGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 27373 >seq6202 Length=441370 Score = 116 bits (128), Expect = 3e-21 Identities = 162/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || ||||| || || ||||| || || | | Sbjct 4652 CCCCTC--AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAA 4595 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | || |||||||| ||||| ||| | || || ||||||||||| ||| | Sbjct 4594 GAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAA 4535 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||||||||| || |||||| ||||| | ||| || |||| ||||||| | Sbjct 4534 TGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCT 4475 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| ||| |||||||||||||| | || || || || || ||||| Sbjct 4474 CCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 4429 Score = 113 bits (124), Expect = 4e-20 Identities = 161/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || ||||| || || ||||| || || | | Sbjct 3284 CCCCTC--AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAA 3227 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | || |||||||| ||||| ||| | || || ||||||||||| || | Sbjct 3226 GAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGAA 3167 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||||||||| || |||||| ||||| | ||| || |||| ||||||| | Sbjct 3166 TGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCT 3107 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| ||| |||||||||||||| | || || || || || ||||| Sbjct 3106 CCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3061 Score = 113 bits (124), Expect = 4e-20 Identities = 161/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || ||||| || || ||||| || || | | Sbjct 3512 CCCCTC--AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAA 3455 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | || |||||||| ||||| ||| | || || ||||||||||| || | Sbjct 3454 GAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGAA 3395 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||||||||| || |||||| ||||| | ||| || |||| ||||||| | Sbjct 3394 TGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCT 3335 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| ||| |||||||||||||| | || || || || || ||||| Sbjct 3334 CCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3289 Score = 113 bits (124), Expect = 4e-20 Identities = 161/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || ||||| || || ||||| || || | | Sbjct 3740 CCCCTC--AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAA 3683 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | || |||||||| ||||| ||| | || || ||||||||||| || | Sbjct 3682 GAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGAA 3623 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||||||||| || |||||| ||||| | ||| || |||| ||||||| | Sbjct 3622 TGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCT 3563 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| ||| |||||||||||||| | || || || || || ||||| Sbjct 3562 CCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3517 Score = 113 bits (124), Expect = 4e-20 Identities = 161/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || ||||| || || ||||| || || | | Sbjct 3968 CCCCTC--AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAA 3911 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | || |||||||| ||||| ||| | || || ||||||||||| || | Sbjct 3910 GAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGAA 3851 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||||||||| || |||||| ||||| | ||| || |||| ||||||| | Sbjct 3850 TGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCT 3791 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| ||| |||||||||||||| | || || || || || ||||| Sbjct 3790 CCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3745 Score = 113 bits (124), Expect = 4e-20 Identities = 161/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || ||||| || || ||||| || || | | Sbjct 4196 CCCCTC--AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAA 4139 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | || |||||||| ||||| ||| | || || ||||||||||| || | Sbjct 4138 GAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGAA 4079 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||||||||| || |||||| ||||| | ||| || |||| ||||||| | Sbjct 4078 TGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCT 4019 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| ||| |||||||||||||| | || || || || || ||||| Sbjct 4018 CCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3973 Score = 113 bits (124), Expect = 4e-20 Identities = 161/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || ||||| || || ||||| || || | | Sbjct 4424 CCCCTC--AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAA 4367 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | || |||||||| ||||| ||| | || || ||||||||||| || | Sbjct 4366 GAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGAA 4307 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||||||||| || |||||| ||||| | ||| || |||| ||||||| | Sbjct 4306 TGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCT 4247 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| ||| |||||||||||||| | || || || || || ||||| Sbjct 4246 CCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 4201 >seq9417 Length=1303462 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/222 (71%), Gaps = 5/222 (2%) Strand=Plus/Plus Query 20959 GCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGG 21018 ||||| | |||| |||| || |||| || || ||||| | | | || || | | Sbjct 1083077 GCCTGGG-ACCAAGTGCATGGTCAACTCTTTCTGGATGTTGTGATAGGAAAGAGTGTAGC 1083135 Query 21019 CGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCT 21078 | || |||| ||| ||||| ||| |||| ||||||||||||| |||||| | |||||||| Sbjct 1083136 CATCTTCCAACTGCTTGCCTGCAGAAATGAGTCTCTGCTGGT-CACGGGGATGCCTTCCT 1083194 Query 21079 TGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAA 21138 | || | ||| ||||| | || | |||| | ||||| |||| ||| | Sbjct 1083195 TATCCTATACCTTGGCCTTCACATTCTTGATGATGTCACTGCGCTCC-ACTCCAGGGTGA 1083253 Query 21139 TGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 || |||||| ||| | ||||| ||||| ||||||||||||| Sbjct 1083254 TGATCTTGCTGGTCA--GTTTTCACAAAGATTTGCATTTTGA 1083293 >seq8498 Length=279317 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 20955 CGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTT 21014 || || || | ||| | ||| | ||||||||||||||||||||| ||||| | || ||| Sbjct 98932 CGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGTA 98873 Query 21015 TGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCT 21074 | | || ||||| || ||||| ||| | || ||||| |||||||| || | ||| Sbjct 98872 CGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCT 98813 Query 21075 TCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACG 21134 ||||| || |||||| || || | | | ||||| ||| || || | Sbjct 98812 TCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGA 98753 Query 21135 GTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || |||||||| || || | || || ||||| || ||||| ||| Sbjct 98752 GTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTTG 98708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422171579368616