Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq15749 2390 0.0 seq13061 138 8e-28 seq9583 123 2e-23 >seq15749 Length=708144 Score = 2390 bits (2650), Expect = 0.0 Identities = 1554/1711 (91%), Gaps = 33/1711 (2%) Strand=Plus/Plus Query 107071 GTCCTAACTCCAGTCCCAGCATGACTAGCTGGTTTGCAGCATCAGGTTACAGATGTCCAT 107130 ||||||||||||| ||||| ||| | |||||||||||| ||||||||||||| ||||| Sbjct 659855 GTCCTAACTCCAGGCCCAGTCTGATCATCTGGTTTGCAGCGTCAGGTTACAGATCTCCAT 659914 Query 107131 CCACAAGGGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTT 107190 ||||||||||| ||||||||||||||||||||||||||| || |||||| ||||||||| Sbjct 659915 CCACAAGGGTCCCAGGCAGGACTTGACTGAGGATATTTGTTTAGAGAAGAAATCTATCTT 659974 Query 107191 TACCATCACTCTGGAGTTG-AACTTGATG-------------TTCTGGATTAGTTTGTAA 107236 | ||||||||||||||||| ||||||||| |||||||||||||||||| Sbjct 659975 TGCCATCACTCTGGAGTTGGAACTTGATGTTCCTTGAGGATGTTCTGGATTAGTTTGTAA 660034 Query 107237 TTAAAGGCATTTTGTTCTGTCCAAGGATCTCCTCCTCCACCTTGCCTGTGCCCAAACTCT 107296 |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct 660035 CTAAAGGCATTTTGTTCTGTCCAAGGATCTCCTCCTCTGCCTTCCCTGTGCCCAAACTCT 660094 Query 107297 CCTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCA 107356 | |||||| |||| |||||||||| ||||||||||||||||||| |||||||| ||||| Sbjct 660095 ACCGATCTCTCATCGCATGAAGATGACTGGGTGGAAGAAGAAGCTCTGCCGGGGGCATCA 660154 Query 107357 TCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAG 107416 |||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| Sbjct 660155 TCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTGCTCTGAGGCTTTCTCTCAG 660214 Query 107417 GTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTG 107476 ||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||| || Sbjct 660215 GTTGAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGGCTTCCAAAGTCAGCGTTG 660274 Query 107477 TAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGG 107536 ||| ||| | || ||||| | ||||||||||||||| ||||| ||||||||||||||||| Sbjct 660275 TAGAGACGTCTTATACAAGAACCTGAAGCTGCCAGCGAAGAGCTCCATCAACTGTTCTGG 660334 Query 107537 GATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAA 107596 |||||| ||||||||||||||||| ||| |||||| ||||| |||||||||||||| | Sbjct 660335 GATCACACGAGGGGACCAGGAAGCGGTGAGCCAGGCTCTCCTGGACAACCTGGAAGTCAG 660394 Query 107597 GAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCG 107656 || ||||||| |||| |||||| |||| | ||||||||||| ||||||||||||||||| Sbjct 660395 CAAGAAGCGGTTGCCTTTCACTGACACCGACTACCTCAACATGACCAGAGACTGTGAGCG 660454 Query 107657 CTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCC 107716 || ||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 660455 GTTTAAGGCCCGAAGGAAGTTCATACAGTTCCCACTGAGCAAAGAAGAGTTAGACTTCCC 660514 Query 107717 CATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGC 107776 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 660515 CATTGCATACTCGATGGTGGTCCACGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGC 660574 Query 107777 CGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTT 107836 |||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||| Sbjct 660575 TGTGTATGCCCCTCAGAACATATACTGTGTCCATGTGGATGAGAAGTCCCCAGAAACTTT 660634 Query 107837 CAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTT 107896 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660635 CAAAGAGGCAGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTT 660694 Query 107897 GGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGA 107956 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 660695 GGTTCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAGGCTGACCTGAACTGTATGGAAGA 660754 Query 107957 CTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCC 108016 |||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 660755 CTTGCTCCAGAGCTTGGTGCCATGGAAATACTTACTGAATACATGTGGGACAGACTTCCC 660814 Query 108017 CATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTAT 108076 |||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 660815 CATAAAGACCAACGCCGAGATGGTCCTGGCCCTCAAGATGTTGAATGGAAAGAACAGTAT 660874 Query 108077 GGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGAC 108136 |||||||||| |||||||||||| |||||||| |||||||||||||||||| ||||||| Sbjct 660875 GGAGTCTGAGATACCTTCTGAGTACAAAAAAACTCGCTGGAAATACCGCTACAAGGTGAC 660934 Query 108137 AGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTT 108196 ||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 660935 AGACAGACTGTACCTGACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCTATGTT 660994 Query 108197 CACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCC 108256 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 660995 CACAGGGAATGCCTATTTTGTGGCTTCTCGAGCCTTTGTCCAACATGTCTTAGAGAACCC 661054 Query 108257 TAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTG 108316 ||||||||||||||| ||||||||| |||||||||||||||||| || ||||||||||| Sbjct 661055 CAAATCCCAAAGACTGATTGAATGGGCCAAAGACACCTATAGCCCTGATGAACACCTCTG 661114 Query 108317 GGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCA 108376 |||||||||||||||||| || ||||||||||||||||| || ||||||||||||||| Sbjct 661115 GGCCACCCTTCAGCGTGCACCATGGATGCCTGGCTCTGTCCCCTACCACCCCAAGTATCA 661174 Query 108377 CATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGT 108436 |||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||| Sbjct 661175 CATCTCAGACATGACTGCCATCGCCAGGCTGGTCAAGTGGCAGGACCATGAGGGAGATGT 661234 Query 108437 CAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTA 108496 ||||||||| || ||||||||||| |||||||||||||||| | ||||||| |||||||| Sbjct 661235 CAGCATGGGAGCCCCTTATGCACCTTGCTCTGGAATCCATCAGCGGGCCATTTGCATTTA 661294 Query 108497 CGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGA 108556 ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 661295 TGGGGCTGGGGACCTGCACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGA 661354 Query 108557 CCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCAT 108616 ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 661355 CCCAAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTATTTACGTCATAAGGCCAT 661414 Query 108617 CTATGGGACTGAACTTTGAGCTGCA------------------CTGTGGGCCAGGGAC-T 108657 |||||||||||||||||||||| | ||| ||||||||||| | Sbjct 661415 TTATGGGACTGAACTTTGAGCTGTACTGCGGACGGATTGCTACCTGAGGGCCAGGGACAT 661474 Query 108658 GTGCCAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAAT 108717 ||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 661475 GTGCCAACATGCCTAGGGCATGCTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAAT 661534 Query 108718 CCATGGCATCCCCCAGGGTCAGAGGGCTGCT 108748 | |||||||||||||||||||||| ||||| Sbjct 661535 TCGTGGCATCCCCCAGGGTCAGAGGCCTGCT 661565 >seq13061 Length=872146 Score = 138 bits (152), Expect = 8e-28 Identities = 574/888 (65%), Gaps = 27/888 (3%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 ||||| |||||||||||| || || || || || || || || ||||| ||| | || Sbjct 478536 CCACTTAGTAAAGAAGAGGCGGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAA 478477 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| ||| | ||| | || |||||||| | || ||| | Sbjct 478476 ATTGAAATGCTTGACAGGCTCCTGAGGGCCATCTACATGCCTCAGAATTTCTATTGTATT 478417 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 |||||||| || || || | || | || | || ||| |||||| Sbjct 478416 CACGTGGACACAAAATCAGAGGAATCGTTTTTGGCTGCAGCTGTGGGCATGGCATCCTGC 478357 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| |||||||| | |||||| || ||| ||||| ||||| |||||| | | Sbjct 478356 TTCAGTAATGTCTTTGTCGCCAGTCAGCTGGAGAGCGTGGTGTATGCATCCTGGAGCCGG 478297 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 || || |||||||| ||||| ||| | ||| | |||||| | | | ||| ||||||| Sbjct 478296 GTTCAGGCTGACCTTAACTGCATGCAGGACCT-CTCCAG-GATGAATGCAGACTGGAAGT 478239 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 || | | ||| ||||| | || || || || || ||||| || || ||| | Sbjct 478238 ACCTGATAAATCTCTGCGGAATGGATTTTCCTATTAAAACCAACCTGGAAATTGTCAGGA 478179 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTA---CCTTCTGAGTCCa 108102 |||||| |||||| |||| |||||| | || | ||| | || || | | Sbjct 478178 AGCTCAAGTTGTTGATGGGTGAGAACAACCTAGAAACGGAGAGAATGCCATCCCAT---A 478122 Query 108103 aaaaaaaTCGCTGGAAATACCGCTATGAGGT---GACAGACACACTGTACCCTACCAGCA 108159 ||||| | | |||||| | | ||||| || || | | ||| ||| | | | Sbjct 478121 AAAAAGAAAGGTGGAAAAAGCATTATGAAGTCGTGAATGGAAAGCTG-ACCAACACGGGA 478063 Query 108160 A--GATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGT 108217 | || || || ||| ||| | | ||| | || |||| | |||||||||||| Sbjct 478062 ACTGACAAAATACA-TCCACCTCTTGAAACACCTCTCTTTTCAGGAAGTGCCTATTTTGT 478004 Query 108218 GGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA-ATCCCAAAGACTGGTTG 108276 || | | | | | ||| | | || | | |||| || |||| |||| | | | Sbjct 478003 GGTCAGTAGGGAATATGTGGAGTACGTGCTCCAGAACCAAAATATCCAAAAGTTTA-TGG 477945 Query 108277 AATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTC 108336 | |||| ||||||||| || ||||| ||||| | ||||||||||| ||||| | | || Sbjct 477944 AGTGGGCCAAAGACACATACAGCCCTGACGAGTATCTCTGGGCCACTATTCAGAG-GATC 477886 Query 108337 CGTGGA-TGCCTGGCTCTGT-TCCT--AGCCACCCCAAGTATCACATCTCAGACATGACT 108392 | | | | || ||||| | |||| ||||| ||||| ||| || |||||| Sbjct 477885 CCCGAAGTCCCAGGCTCACTGTCCTTGAGCCA---TAAGTACGACACGTCTGACATGCAG 477829 Query 108393 GCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCT 108452 || || |||||| | || || ||||||||| || ||||| || || ||| || || Sbjct 477828 GCGATTGCCAGGTTTGTTAAATGGCAGTACTTTGAAGGAGACGTTTCCAAGGGCGCCCCC 477769 Query 108453 TATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTG 108512 || | || ||| || |||| | | || | ||| ||| ||| ||||| ||| || Sbjct 477768 TACCCGCCGTGCGGCGGCGTCCACGTGCGCTCCGTGTGCGTTTTCGGAGCCGGTGACTTG 477709 Query 108513 TACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCG 108560 ||||| | | | || ||| | || || ||||| || |||||| Sbjct 477708 AACTGGCTGTTGCGCGTGCACCACTTGTTTGCCAACAAATTCGACCCG 477661 >seq9583 Length=3335663 Score = 123 bits (136), Expect = 2e-23 Identities = 95/113 (84%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 108751 GATGGGGTCAGGATGTTGGCTCCAGGAGAGGCCTGTTCACCCATGTCTCTTGGAGCTCCA 108810 || || |||||||| ||||||||||||| | | |||||| ||| || ||||||||| Sbjct 1828573 GACGGTGTCAGGATACTGGCTCCAGGAGATGTCCGTTCACTCATTTCATCAGGAGCTCCA 1828632 Query 108811 CATATGAGAGTGTTGGGTAGGGTGATGTTTGGTCCCGAATTAACTTCTCTAAC 108863 | |||||| |||||||||| |||||||||||| ||||||| |||||||||||| Sbjct 1828633 CGTATGAGTGTGTTGGGTATGGTGATGTTTGGCCCCGAATCAACTTCTCTAAC 1828685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348196532700324