Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq15749 2390 0.0
seq13061 138 8e-28
seq9583 123 2e-23
>seq15749
Length=708144
Score = 2390 bits (2650), Expect = 0.0
Identities = 1554/1711 (91%), Gaps = 33/1711 (2%)
Strand=Plus/Plus
Query 107071 GTCCTAACTCCAGTCCCAGCATGACTAGCTGGTTTGCAGCATCAGGTTACAGATGTCCAT 107130
||||||||||||| ||||| ||| | |||||||||||| ||||||||||||| |||||
Sbjct 659855 GTCCTAACTCCAGGCCCAGTCTGATCATCTGGTTTGCAGCGTCAGGTTACAGATCTCCAT 659914
Query 107131 CCACAAGGGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTT 107190
||||||||||| ||||||||||||||||||||||||||| || |||||| |||||||||
Sbjct 659915 CCACAAGGGTCCCAGGCAGGACTTGACTGAGGATATTTGTTTAGAGAAGAAATCTATCTT 659974
Query 107191 TACCATCACTCTGGAGTTG-AACTTGATG-------------TTCTGGATTAGTTTGTAA 107236
| ||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 659975 TGCCATCACTCTGGAGTTGGAACTTGATGTTCCTTGAGGATGTTCTGGATTAGTTTGTAA 660034
Query 107237 TTAAAGGCATTTTGTTCTGTCCAAGGATCTCCTCCTCCACCTTGCCTGTGCCCAAACTCT 107296
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 660035 CTAAAGGCATTTTGTTCTGTCCAAGGATCTCCTCCTCTGCCTTCCCTGTGCCCAAACTCT 660094
Query 107297 CCTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCA 107356
| |||||| |||| |||||||||| ||||||||||||||||||| |||||||| |||||
Sbjct 660095 ACCGATCTCTCATCGCATGAAGATGACTGGGTGGAAGAAGAAGCTCTGCCGGGGGCATCA 660154
Query 107357 TCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAG 107416
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||
Sbjct 660155 TCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTGCTCTGAGGCTTTCTCTCAG 660214
Query 107417 GTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTG 107476
||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||
Sbjct 660215 GTTGAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGGCTTCCAAAGTCAGCGTTG 660274
Query 107477 TAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGG 107536
||| ||| | || ||||| | ||||||||||||||| ||||| |||||||||||||||||
Sbjct 660275 TAGAGACGTCTTATACAAGAACCTGAAGCTGCCAGCGAAGAGCTCCATCAACTGTTCTGG 660334
Query 107537 GATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAA 107596
|||||| ||||||||||||||||| ||| |||||| ||||| |||||||||||||| |
Sbjct 660335 GATCACACGAGGGGACCAGGAAGCGGTGAGCCAGGCTCTCCTGGACAACCTGGAAGTCAG 660394
Query 107597 GAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCG 107656
|| ||||||| |||| |||||| |||| | ||||||||||| |||||||||||||||||
Sbjct 660395 CAAGAAGCGGTTGCCTTTCACTGACACCGACTACCTCAACATGACCAGAGACTGTGAGCG 660454
Query 107657 CTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCC 107716
|| ||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 660455 GTTTAAGGCCCGAAGGAAGTTCATACAGTTCCCACTGAGCAAAGAAGAGTTAGACTTCCC 660514
Query 107717 CATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGC 107776
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 660515 CATTGCATACTCGATGGTGGTCCACGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGC 660574
Query 107777 CGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTT 107836
|||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||
Sbjct 660575 TGTGTATGCCCCTCAGAACATATACTGTGTCCATGTGGATGAGAAGTCCCCAGAAACTTT 660634
Query 107837 CAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTT 107896
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660635 CAAAGAGGCAGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTT 660694
Query 107897 GGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGA 107956
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 660695 GGTTCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAGGCTGACCTGAACTGTATGGAAGA 660754
Query 107957 CTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCC 108016
|||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 660755 CTTGCTCCAGAGCTTGGTGCCATGGAAATACTTACTGAATACATGTGGGACAGACTTCCC 660814
Query 108017 CATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTAT 108076
|||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 660815 CATAAAGACCAACGCCGAGATGGTCCTGGCCCTCAAGATGTTGAATGGAAAGAACAGTAT 660874
Query 108077 GGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGAC 108136
|||||||||| |||||||||||| |||||||| |||||||||||||||||| |||||||
Sbjct 660875 GGAGTCTGAGATACCTTCTGAGTACAAAAAAACTCGCTGGAAATACCGCTACAAGGTGAC 660934
Query 108137 AGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTT 108196
||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 660935 AGACAGACTGTACCTGACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCTATGTT 660994
Query 108197 CACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCC 108256
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 660995 CACAGGGAATGCCTATTTTGTGGCTTCTCGAGCCTTTGTCCAACATGTCTTAGAGAACCC 661054
Query 108257 TAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTG 108316
||||||||||||||| ||||||||| |||||||||||||||||| || |||||||||||
Sbjct 661055 CAAATCCCAAAGACTGATTGAATGGGCCAAAGACACCTATAGCCCTGATGAACACCTCTG 661114
Query 108317 GGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCA 108376
|||||||||||||||||| || ||||||||||||||||| || |||||||||||||||
Sbjct 661115 GGCCACCCTTCAGCGTGCACCATGGATGCCTGGCTCTGTCCCCTACCACCCCAAGTATCA 661174
Query 108377 CATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGT 108436
|||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||
Sbjct 661175 CATCTCAGACATGACTGCCATCGCCAGGCTGGTCAAGTGGCAGGACCATGAGGGAGATGT 661234
Query 108437 CAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTA 108496
||||||||| || ||||||||||| |||||||||||||||| | ||||||| ||||||||
Sbjct 661235 CAGCATGGGAGCCCCTTATGCACCTTGCTCTGGAATCCATCAGCGGGCCATTTGCATTTA 661294
Query 108497 CGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGA 108556
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 661295 TGGGGCTGGGGACCTGCACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGA 661354
Query 108557 CCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCAT 108616
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 661355 CCCAAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTATTTACGTCATAAGGCCAT 661414
Query 108617 CTATGGGACTGAACTTTGAGCTGCA------------------CTGTGGGCCAGGGAC-T 108657
|||||||||||||||||||||| | ||| ||||||||||| |
Sbjct 661415 TTATGGGACTGAACTTTGAGCTGTACTGCGGACGGATTGCTACCTGAGGGCCAGGGACAT 661474
Query 108658 GTGCCAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAAT 108717
||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 661475 GTGCCAACATGCCTAGGGCATGCTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAAT 661534
Query 108718 CCATGGCATCCCCCAGGGTCAGAGGGCTGCT 108748
| |||||||||||||||||||||| |||||
Sbjct 661535 TCGTGGCATCCCCCAGGGTCAGAGGCCTGCT 661565
>seq13061
Length=872146
Score = 138 bits (152), Expect = 8e-28
Identities = 574/888 (65%), Gaps = 27/888 (3%)
Strand=Plus/Minus
Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747
||||| |||||||||||| || || || || || || || || ||||| ||| | ||
Sbjct 478536 CCACTTAGTAAAGAAGAGGCGGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAA 478477
Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807
||||||| |||| |||| ||| | ||| | || |||||||| | || ||| |
Sbjct 478476 ATTGAAATGCTTGACAGGCTCCTGAGGGCCATCTACATGCCTCAGAATTTCTATTGTATT 478417
Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867
|||||||| || || || | || | || | || ||| ||||||
Sbjct 478416 CACGTGGACACAAAATCAGAGGAATCGTTTTTGGCTGCAGCTGTGGGCATGGCATCCTGC 478357
Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927
||| |||||||| | |||||| || ||| ||||| ||||| |||||| | |
Sbjct 478356 TTCAGTAATGTCTTTGTCGCCAGTCAGCTGGAGAGCGTGGTGTATGCATCCTGGAGCCGG 478297
Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985
|| || |||||||| ||||| ||| | ||| | |||||| | | | ||| |||||||
Sbjct 478296 GTTCAGGCTGACCTTAACTGCATGCAGGACCT-CTCCAG-GATGAATGCAGACTGGAAGT 478239
Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045
|| | | ||| ||||| | || || || || || ||||| || || ||| |
Sbjct 478238 ACCTGATAAATCTCTGCGGAATGGATTTTCCTATTAAAACCAACCTGGAAATTGTCAGGA 478179
Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTA---CCTTCTGAGTCCa 108102
|||||| |||||| |||| |||||| | || | ||| | || || | |
Sbjct 478178 AGCTCAAGTTGTTGATGGGTGAGAACAACCTAGAAACGGAGAGAATGCCATCCCAT---A 478122
Query 108103 aaaaaaaTCGCTGGAAATACCGCTATGAGGT---GACAGACACACTGTACCCTACCAGCA 108159
||||| | | |||||| | | ||||| || || | | ||| ||| | | |
Sbjct 478121 AAAAAGAAAGGTGGAAAAAGCATTATGAAGTCGTGAATGGAAAGCTG-ACCAACACGGGA 478063
Query 108160 A--GATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGT 108217
| || || || ||| ||| | | ||| | || |||| | ||||||||||||
Sbjct 478062 ACTGACAAAATACA-TCCACCTCTTGAAACACCTCTCTTTTCAGGAAGTGCCTATTTTGT 478004
Query 108218 GGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA-ATCCCAAAGACTGGTTG 108276
|| | | | | | ||| | | || | | |||| || |||| |||| | | |
Sbjct 478003 GGTCAGTAGGGAATATGTGGAGTACGTGCTCCAGAACCAAAATATCCAAAAGTTTA-TGG 477945
Query 108277 AATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTC 108336
| |||| ||||||||| || ||||| ||||| | ||||||||||| ||||| | | ||
Sbjct 477944 AGTGGGCCAAAGACACATACAGCCCTGACGAGTATCTCTGGGCCACTATTCAGAG-GATC 477886
Query 108337 CGTGGA-TGCCTGGCTCTGT-TCCT--AGCCACCCCAAGTATCACATCTCAGACATGACT 108392
| | | | || ||||| | |||| ||||| ||||| ||| || ||||||
Sbjct 477885 CCCGAAGTCCCAGGCTCACTGTCCTTGAGCCA---TAAGTACGACACGTCTGACATGCAG 477829
Query 108393 GCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCT 108452
|| || |||||| | || || ||||||||| || ||||| || || ||| || ||
Sbjct 477828 GCGATTGCCAGGTTTGTTAAATGGCAGTACTTTGAAGGAGACGTTTCCAAGGGCGCCCCC 477769
Query 108453 TATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTG 108512
|| | || ||| || |||| | | || | ||| ||| ||| ||||| ||| ||
Sbjct 477768 TACCCGCCGTGCGGCGGCGTCCACGTGCGCTCCGTGTGCGTTTTCGGAGCCGGTGACTTG 477709
Query 108513 TACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCG 108560
||||| | | | || ||| | || || ||||| || ||||||
Sbjct 477708 AACTGGCTGTTGCGCGTGCACCACTTGTTTGCCAACAAATTCGACCCG 477661
>seq9583
Length=3335663
Score = 123 bits (136), Expect = 2e-23
Identities = 95/113 (84%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 108751 GATGGGGTCAGGATGTTGGCTCCAGGAGAGGCCTGTTCACCCATGTCTCTTGGAGCTCCA 108810
|| || |||||||| ||||||||||||| | | |||||| ||| || |||||||||
Sbjct 1828573 GACGGTGTCAGGATACTGGCTCCAGGAGATGTCCGTTCACTCATTTCATCAGGAGCTCCA 1828632
Query 108811 CATATGAGAGTGTTGGGTAGGGTGATGTTTGGTCCCGAATTAACTTCTCTAAC 108863
| |||||| |||||||||| |||||||||||| ||||||| ||||||||||||
Sbjct 1828633 CGTATGAGTGTGTTGGGTATGGTGATGTTTGGCCCCGAATCAACTTCTCTAAC 1828685
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 348196532700324
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