Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq6424 120 3e-22
>seq6424
Length=433988
Score = 120 bits (132), Expect = 3e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285
|||||||||| ||||||||||| || ||||| || | || ||||||| ||||||||| |
Sbjct 17768 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 17709
Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345
| | ||| ||||||| || || || ||||||||||| || || || ||||| ||||| |
Sbjct 17708 TGAGCCAGAATATTGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 17649
Query 14346 CTATTAATCGTTCTCC 14361
||| | ||||||||
Sbjct 17648 CTACCACACGTTCTCC 17633
Score = 96.9 bits (106), Expect = 3e-15
Identities = 79/96 (82%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957
|| || || ||||| | ||||| || | ||||| || |||||||||||||| || ||
Sbjct 19306 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 19247
Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13993
|||||||| |||||||||||||| ||||||||||||
Sbjct 19246 TCCAGTGAAATATTTTCCATAAAGTCAAATGGATTT 19211
Score = 84.2 bits (92), Expect = 2e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532
|||||| || |||||||| | |||||||||||||| |||||||||||||| || || ||
Sbjct 16930 AATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 16871
Query 14533 AAAACCATAAAAACATCTAGCTTC 14556
|| ||||| ||||| | |||||
Sbjct 16870 GAAGCCATAGAAACAACGGGCTTC 16847
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482242944797680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |