Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq11172 100 3e-16
seq8498 96.9 3e-15
seq10972 89.7 5e-13
seq1447 84.2 2e-11
>seq11172
Length=1040880
Score = 100 bits (110), Expect = 3e-16
Identities = 157/222 (71%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||||| ||||| ||||| || || || ||||| |||| || || ||
Sbjct 4552 AAGATGCAGATTTTCGTGAAGACCCTGACTGGGAAGACCATCACTCTCGAGGTCGAGCCC 4493
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| || | | |||| || || | || ||| |||||||| | || || |||
Sbjct 4492 TCAGAAACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 4433
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368
||||| | || || || ||||||| || ||||||| | ||| ||| || || ||
Sbjct 4432 CAGCAAAGACTGATCTTTTCTGGCAAGCAACTGGAAGA-TGGATGTACTTTGTCTGACTA 4374
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
||||||||||| || || ||||||||||| || | |||||
Sbjct 4373 CAACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 4332
>seq8498
Length=279317
Score = 96.9 bits (106), Expect = 3e-15
Identities = 156/222 (70%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| ||||| || ||||| ||||| || || || ||||| |||| || |||||
Sbjct 98709 AAGATGCAGATTTTTGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCC 98768
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| || | | |||| || || | || ||| |||||||| | || || |||
Sbjct 98769 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 98828
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368
||||| | || || || |||||||| || ||||||| | | | || || || ||
Sbjct 98829 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACCTTGTCTGACTA 98887
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
||||||||||| || || ||||||||||| || | |||||
Sbjct 98888 CAACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 98929
>seq10972
Length=1569106
Score = 89.7 bits (98), Expect = 5e-13
Identities = 152/220 (69%), Gaps = 8/220 (4%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||||| ||||| ||||| || || || || || |||| || |||||
Sbjct 1317656 AAGATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATTACTCTCGAGGTCGAACCC 1317715
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| || | | |||| || || | || ||| |||||||| | || || |||
Sbjct 1317716 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 1317775
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTC---TATG-----ACTATGA 31361
||||| | || || || |||||||| || ||||||| |||| ||| ||
Sbjct 1317776 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTATGGACGTACTTTGT 1317835
Query 31362 GCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401
|| || ||||||||||| || || ||||||||||| ||
Sbjct 1317836 CTGACTACAACATTCAAAAGGAGTCCACTCTTCATCTAGT 1317875
>seq1447
Length=2301054
Score = 84.2 bits (92), Expect = 2e-11
Identities = 151/221 (68%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||||| ||||| |||| || || || ||||| || | ||||||||
Sbjct 2080036 AAGATGCAGATTTTCGTGAAGACCCTGATGGGGAAGACCATCACTCTCAAGGTTGAACCC 2079977
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| || | | |||| || || | || ||| |||||||| | || || ||
Sbjct 2079976 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAG 2079917
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
||||| | | || || |||||||| || ||||||| ||| || || ||
Sbjct 2079916 CAGCAAAGACAGATCTTTGCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGACTAC 2079857
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
||||||||||| || | ||||||||||| || | |||||
Sbjct 2079856 AACATTCAAAAGGAGTTCACTCTTCATCTAGTGTTGAGACT 2079816
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445671529765920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |