Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq11172 100 3e-16 seq8498 96.9 3e-15 seq10972 89.7 5e-13 seq1447 84.2 2e-11 >seq11172 Length=1040880 Score = 100 bits (110), Expect = 3e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| ||||| || || || ||||| |||| || || || Sbjct 4552 AAGATGCAGATTTTCGTGAAGACCCTGACTGGGAAGACCATCACTCTCGAGGTCGAGCCC 4493 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || ||| |||||||| | || || ||| Sbjct 4492 TCAGAAACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 4433 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || ||||||| || ||||||| | ||| ||| || || || Sbjct 4432 CAGCAAAGACTGATCTTTTCTGGCAAGCAACTGGAAGA-TGGATGTACTTTGTCTGACTA 4374 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || ||||||||||| || | ||||| Sbjct 4373 CAACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 4332 >seq8498 Length=279317 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||| || ||||| ||||| || || || ||||| |||| || ||||| Sbjct 98709 AAGATGCAGATTTTTGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCC 98768 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || ||| |||||||| | || || ||| Sbjct 98769 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 98828 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || |||||||| || ||||||| | | | || || || || Sbjct 98829 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACCTTGTCTGACTA 98887 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || ||||||||||| || | ||||| Sbjct 98888 CAACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 98929 >seq10972 Length=1569106 Score = 89.7 bits (98), Expect = 5e-13 Identities = 152/220 (69%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| ||||| || || || || || |||| || ||||| Sbjct 1317656 AAGATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATTACTCTCGAGGTCGAACCC 1317715 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || ||| |||||||| | || || ||| Sbjct 1317716 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 1317775 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTC---TATG-----ACTATGA 31361 ||||| | || || || |||||||| || ||||||| |||| ||| || Sbjct 1317776 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTATGGACGTACTTTGT 1317835 Query 31362 GCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 || || ||||||||||| || || ||||||||||| || Sbjct 1317836 CTGACTACAACATTCAAAAGGAGTCCACTCTTCATCTAGT 1317875 >seq1447 Length=2301054 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| |||| || || || ||||| || | |||||||| Sbjct 2080036 AAGATGCAGATTTTCGTGAAGACCCTGATGGGGAAGACCATCACTCTCAAGGTTGAACCC 2079977 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || ||| |||||||| | || || || Sbjct 2079976 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAG 2079917 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||| | | || || |||||||| || ||||||| ||| || || || Sbjct 2079916 CAGCAAAGACAGATCTTTGCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGACTAC 2079857 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || | ||||||||||| || | ||||| Sbjct 2079856 AACATTCAAAAGGAGTTCACTCTTCATCTAGTGTTGAGACT 2079816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445671529765920