Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq15383 163 4e-35
seq5291 134 2e-26
seq6424 114 2e-20
seq15771 107 2e-18
seq11817 98.7 1e-15
>seq15383
Length=941475
Score = 163 bits (180), Expect = 4e-35
Identities = 203/278 (73%), Gaps = 0/278 (0%)
Strand=Plus/Minus
Query 188378 GGATCTATAGGCTTGATTTTCGCATTGACTTTACACAGACATAAACATCCCCTGAATCTG 188437
|||||| | || ||||||| || |||||||| |||||||||| |||||||| || |
Sbjct 180043 GGATCTTTGGGTCTGATTTTAGCTATGACTTTAAACAGACATAAGCATCCCCTTAACCCA 179984
Query 188438 TACCTACTTTGTGGATTTACACTGTTAGAATCTCTAACGCTGGCCTCTGTTGTTACTTTC 188497
|||| |||| || ||||| ||||| ||| |||| || |||||| |||||||||||
Sbjct 179983 CACCTGCTTTTTGTATTTATGCTGTTGGAAGCTCTGACTGTGGCCTTCATTGTTACTTTC 179924
Query 188498 TATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTTCTTGCTCTG 188557
| ||||| ||| || | |||| ||| || |||| |||||| |||| || |
Sbjct 179923 TGTGATGTATATATTGTCCTGCAAGATTTTATACTGACCCGTGCAGTATTTCCTGATTCA 179864
Query 188558 ACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGGATTGTTTGCT 188617
||| | |||||| ||||| ||||||||| ||| ||| ||| | |||| | ||| ||
Sbjct 179863 ACTGTGTATACTCTGCAATCTGAGAGAGATTGCAGCAAATTTGGAGCAGGCCTATTTTCT 179804
Query 188618 GCTTTCTGGATTTTAATTTTGTCAGGAGTCTTGAGGAT 188655
| || |||||||| ||||||||| ||||| |||
Sbjct 179803 GACTTGTGGATTTTGTGCTTGTCAGGAACCTTGAAGAT 179766
>seq5291
Length=463539
Score = 134 bits (148), Expect = 2e-26
Identities = 112/137 (82%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447
|| || |||||||| ||||| ||||| |||||||| || ||||||||||| ||||| |
Sbjct 20686 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 20745
Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507
||||||||||||||||| || ||||||||||| ||||| ||||| || || | | ||||
Sbjct 20746 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 20805
Query 62508 CTATTTCTAAGACCGTA 62524
|| ||||| | ||| ||
Sbjct 20806 CTGTTTCTTATACCATA 20822
Score = 100 bits (110), Expect = 4e-16
Identities = 136/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685
|||| || ||||| || || | || || || || | ||| || || || || || || |
Sbjct 26479 CATAGGTTTCATAAGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 26538
Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745
||||||||||||||||||||| |||||| | || || || || || ||||| || |
Sbjct 26539 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 26598
Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805
| | | |||||||| || || || | ||||| || ||||| ||||| || | ||| |
Sbjct 26599 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCGATGGGGCGATGGC 26658
Query 62806 TCTTATTAGA 62815
||||| ||
Sbjct 26659 GTTTATTCGA 26668
Score = 91.5 bits (100), Expect = 2e-13
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322
|| |||||| ||||| |||||||| ||||||||||| || | || || || || | |
Sbjct 32912 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 32971
Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382
|| || || |||||||| ||||| || | ||| |||||| | | || || |||||||
Sbjct 32972 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 33031
Query 63383 CGGTTCCAAGTATATGGC 63400
||||||| ||| || ||
Sbjct 33032 AGGTTCCAGGTAAATAGC 33049
>seq6424
Length=433988
Score = 114 bits (126), Expect = 2e-20
Identities = 98/121 (81%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
|||| ||||| ||||| | ||| || ||||||||||| || ||||| || || || || |
Sbjct 17768 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 17709
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| ||||| ||||| || || || || |||||||||||||| ||||| ||||| |||||||
Sbjct 17708 TGAGCCAGAATATTGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 17649
Query 33724 C 33724
|
Sbjct 17648 C 17648
Score = 102 bits (112), Expect = 1e-16
Identities = 86/106 (81%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901
|||||||| ||||| || || | |||||||||||||| ||||| |||||||| |||||
Sbjct 16936 ATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 16877
Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947
|| || || || |||||||| | || ||||||||||| ||||||
Sbjct 16876 AATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCT 16831
>seq15771
Length=710668
Score = 107 bits (118), Expect = 2e-18
Identities = 95/119 (80%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548
|||||||||||||||| | | | || | ||||||||||| ||||| |||||| |||
Sbjct 434089 GTTACTTTCTATGATGTGTATGTTGTCCTGCAAGCTTTCATACTGACTTGTGCAGTATTT 434030
Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607
|||| | ||||| || ||||||||| || |||||||||||||| ||| ||| | ||||
Sbjct 434029 CTTGGTTTGACTGTATATACTCTACAGTCTAAGAGAGATTTCAGCAAATTTGGAGCAGG 433971
Score = 100 bits (110), Expect = 4e-16
Identities = 64/70 (91%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231
||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||||
Sbjct 444035 TGCTCCTCCATCGAGGACGACTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGCGTGCAC 443976
Query 188232 ATACGAATGG 188241
|| |||||||
Sbjct 443975 ATCCGAATGG 443966
Score = 86.0 bits (94), Expect = 8e-12
Identities = 82/104 (79%), Gaps = 1/104 (1%)
Strand=Plus/Minus
Query 188241 GCATTTCTAAGAAAAGTCTACGGTATCCTTG-TCTACAATTTCCTTTAACAACGGCAACA 188299
|| |||||||||||||||||| | |||||| ||| ||| ||| ||||| || | |||
Sbjct 438605 GCTTTTCTAAGAAAAGTCTACAGCATCCTTTCTCTGCAAGTTCTCTTAACTACAGTGACA 438546
Query 188300 GCTGCAGTATTTTTATACTTTGAATGCATTCGGACATTTATACA 188343
| ||| | |||||||||||||| | || ||||||||| ||||
Sbjct 438545 TCGGCAATTTTTTTATACTTTGATTCTATACGGACATTTGTACA 438502
>seq11817
Length=981421
Score = 98.7 bits (108), Expect = 1e-15
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665
|| ||||| || || | || || ||||| |||||||||||||| || || | || ||
Sbjct 476697 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCGGGCATGAGTCCTCTTTTCTTT 476756
Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724
||||| ||||| | ||| || ||||| || ||||| |||||||| || |||||||||||
Sbjct 476757 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCCACAGCAGCAAAGGC 476815
Score = 84.2 bits (92), Expect = 3e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025
|||||||||||||| ||||||||||||||||||||||| || || | || ||||||
Sbjct 481673 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAAATAAAA 481732
Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 34081
|| || || |||| | | || || ||||| | | | ||| || |||| ||| ||
Sbjct 481733 TACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGAAGATCCTTTGATAAATCAAC 481788
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629683559069280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |