Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq11817 123 2e-23 seq5291 96.9 3e-15 >seq11817 Length=981421 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || || ||||| ||||| || | ||||||||| | ||||| ||| | Sbjct 476695 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCGGGCATGAGTCCTCTTTTCT 476754 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| ||||| |||||||| ||||| | Sbjct 476755 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 476814 Query 11772 CTACTACTCTTTCTCC 11787 | || || ||||| || Sbjct 476815 CCACCACCCTTTCCCC 476830 >seq5291 Length=463539 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | || || || || || ||||| |||||||| Sbjct 20686 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 20745 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | ||||| |||| || || ||||||||||| || || || || | Sbjct 20746 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 20805 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 20806 CTGTTTCTTATACCAT 20821 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/150 (73%), Gaps = 4/150 (3%) Strand=Plus/Plus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| ||||| || |||||||| || ||||| | || |||| | | | |||| ||| Sbjct 18389 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGT 18448 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATAC--A 36980 ||| || || |||||||| || || || ||||| |||||||||| ||| | ||| Sbjct 18449 TCAAAGACTGGCTTTGATCAATGAAAGCGCCTCTCTCGGCTGCCA--TCTTGAGTACGGT 18506 Query 36981 TTTTTGAGATATCTCCCAAACCGTTTTATA 37010 ||| ||||| || ||||| || || ||||| Sbjct 18507 TTTCTGAGAGATTTCCCACACAGTCTTATA 18536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468425086209440