Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq11817 123 2e-23
seq5291 96.9 3e-15
>seq11817
Length=981421
Score = 123 bits (136), Expect = 2e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711
|||| ||||| || || || ||||| ||||| || | ||||||||| | ||||| ||| |
Sbjct 476695 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCGGGCATGAGTCCTCTTTTCT 476754
Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771
||| ||| |||||||||||||| || || || ||||| ||||| |||||||| ||||| |
Sbjct 476755 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 476814
Query 11772 CTACTACTCTTTCTCC 11787
| || || ||||| ||
Sbjct 476815 CCACCACCCTTTCCCC 476830
>seq5291
Length=463539
Score = 96.9 bits (106), Expect = 3e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197
|||||||| ||||| || || ||||| | || || || || || ||||| ||||||||
Sbjct 20686 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 20745
Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257
||||||||||| | ||||| |||| || || ||||||||||| || || || || |
Sbjct 20746 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 20805
Query 37258 CTATTTCTCAATCCAT 37273
|| ||||| | ||||
Sbjct 20806 CTGTTTCTTATACCAT 20821
Score = 86.0 bits (94), Expect = 6e-12
Identities = 110/150 (73%), Gaps = 4/150 (3%)
Strand=Plus/Plus
Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922
|||| ||||| || |||||||| || ||||| | || |||| | | | |||| |||
Sbjct 18389 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGT 18448
Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATAC--A 36980
||| || || |||||||| || || || ||||| |||||||||| ||| | |||
Sbjct 18449 TCAAAGACTGGCTTTGATCAATGAAAGCGCCTCTCTCGGCTGCCA--TCTTGAGTACGGT 18506
Query 36981 TTTTTGAGATATCTCCCAAACCGTTTTATA 37010
||| ||||| || ||||| || || |||||
Sbjct 18507 TTTCTGAGAGATTTCCCACACAGTCTTATA 18536
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468425086209440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |