Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq15383 197 2e-45 seq15771 185 1e-41 seq5291 140 4e-28 seq6424 120 4e-22 seq11817 102 1e-16 >seq15383 Length=941475 Score = 197 bits (218), Expect = 2e-45 Identities = 225/301 (75%), Gaps = 1/301 (0%) Strand=Plus/Plus Query 9407 CTCCACTGTTTCACTTTGCACAAATATCCTCAAAAGTCCTGACAAAATTAAAATCCACAA 9466 ||||| |||||||| | | ||| ||| |||| ||||||||| ||||||||||| Sbjct 179742 CTCCATTGTTTCACCGTAAA-AAACATCTTCAAGGTTCCTGACAAGCACAAAATCCACAA 179800 Query 9467 AGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGC 9526 | ||| | |||||||||| ||| ||| ||||||||| ||||| |||||||| | Sbjct 179801 GTCAGAAAATAGGCCTGCTCCAAATTTGCTGCAATCTCTCTCAGATTGCAGAGTATACAC 179860 Query 9527 AGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATC 9586 ||| | || |||| |||||| ||||| || ||| |||||| || | || ||||| Sbjct 179861 AGTTGAATCAGGAAATACTGCACGGGTCAGTATAAAATCTTGCAGGACAATATATACATC 179920 Query 9587 ATAGAAAGTAACAACAGAGGCCAGCGTTAGAGATTCCGACAGTGTAAATCCACAAAGCAG 9646 | |||||||||||| |||||| || |||| |||| |||| ||||| || ||||||| Sbjct 179921 ACAGAAAGTAACAATGAAGGCCACAGTCAGAGCTTCCAACAGCATAAATACAAAAAGCAG 179980 Query 9647 GTATAAATTCAGGGGATGTTTATGTCTGTGTAAAGTCAATGCGAAAATCAAGCCTATAGA 9706 || | || |||||||| |||||||||| |||||||| || ||||||| || | ||| Sbjct 179981 GTGTGGGTTAAGGGGATGCTTATGTCTGTTTAAAGTCATAGCTAAAATCAGACCCAAAGA 180040 Query 9707 T 9707 | Sbjct 180041 T 180041 Score = 96.9 bits (106), Expect = 5e-15 Identities = 120/160 (75%), Gaps = 7/160 (4%) Strand=Plus/Plus Query 9230 TTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCA-AGAACAGATTGATGATATCCA 9288 ||||| |||| | ||||||||| || || | ||| | || || |||| |||||||| Sbjct 179344 TTTCT-ATTAATTGCTTCCAAAACTTGCAA---AGGCATAAAAGAGGTTGAGGATATCCA 179399 Query 9289 AGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGT 9348 ||||| |||||| ||||| ||||| |||||||| || || ||| || |||| || Sbjct 179400 CGTAGAGGCTGATAGCAGCTAATACATACTCTTCAGGTGACAGTCTATACATCAGTGTGT 179459 Query 9349 GCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCC 9388 | |||||||||| || |||| |||||| | |||||| || Sbjct 179460 G--TGTCATAGATGATAAATCTGCAGAAAAGAAGGGCTCC 179497 >seq15771 Length=710668 Score = 185 bits (204), Expect = 1e-41 Identities = 162/202 (80%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || |||||| | ||||||||| | | ||||| |||||||| ||||||||||||||||| Sbjct 430970 TTTTTATTAACTGCTTCCAAAACCCGCAACAGGTGCAAGAAGAGATTGATGATATCCAAA 431029 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 |||| ||||| | ||||| ||||| |||||||| || ||| | || || |||||||| Sbjct 431030 TAGAGGTTGATGGCCGCTAATACATACTCTTCAGGTGACAGCCTGTGCATCAGTGAGTGT 431089 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 ||||||||||| |||||||||||||| | | ||| ||| ||||| || ||||| |||| Sbjct 431090 GTGTCATAGATGATGAATCCGCAGAAAAGGATGGCTCCACCAGCAGCCAAGACCAACTCC 431149 Query 9411 ACTGTTTCACTTTGCACAAATA 9432 ||||| ||||| | | ||||| Sbjct 431150 ACTGTCTCACTGTAAAAAAATA 431171 Score = 147 bits (162), Expect = 3e-30 Identities = 104/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| |||||||||||||| || |||||||||||| |||||| | ||||| Sbjct 433971 CCTGCTCCAAATTTGCTGAAATCTCTCTTAGACTGTAGAGTATATACAGTCAAACCAAGA 434030 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||| |||||| ||||||||||||| || |||| |||||||||||||||||| Sbjct 434031 AATACTGCACAAGTCAGTATGAAAGCTTGCAGGACAACATACACATCATAGAAAGTAAC 434089 Score = 104 bits (114), Expect = 3e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||||||| |||||||| ||||| || ||||| ||||||||||||||||||||||||||| Sbjct 443966 CCATTCGGATGTGCACGCTGGCGGAGGCCACGCAGCTGCCATAGTTGAAGTCGTCCTCGA 444025 Query 9907 TGGAGGAGCACGCGTAG 9923 |||||||||| | |||| Sbjct 444026 TGGAGGAGCAGGGGTAG 444042 Score = 89.7 bits (98), Expect = 7e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 9744 TGTATAATTTTCCGCATGCAGTCAAAGTATAAAAATACTGCAGTTGTTGCCGTTGTTAAA 9803 |||| || | |||| || | |||||||||||||| | ||| | ||| | || ||||| Sbjct 438502 TGTACAAATGTCCGTATAGAATCAAAGTATAAAAAAATTGCCGATGTCACTGTAGTTAAG 438561 Query 9804 AGAAATTGTAGACAAAGGATACCGTAGACTTTTCTTAGAAATGC 9847 |||| ||| ||| ||||||| | |||||||||||||||||| || Sbjct 438562 AGAACTTGCAGAGAAAGGATGCTGTAGACTTTTCTTAGAAAAGC 438605 >seq5291 Length=463539 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 20686 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 20745 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 20746 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 20805 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 20806 CTGTTTCTTATACCATA 20822 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| |||| ||| || ||||||||||| | || || ||||| || || || || | | Sbjct 44646 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGA 44705 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | ||||| | || || ||| | || || |||| ||| |||| Sbjct 44706 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAAAGTATCCA 44765 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 44766 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 44811 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 |||| || || || || || | || || || || ||||| || || || || || || | Sbjct 26479 CATAGGTTTCATAAGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 26538 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 ||||||||||||| ||||||| |||||| | || || || | || ||||| || | Sbjct 26539 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 26598 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 | | | |||||||| || ||||| | ||||| || ||||| ||||| || | ||| | Sbjct 26599 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCGATGGGGCGATGGC 26658 Query 65599 TCTTATTAGA 65608 ||||| || Sbjct 26659 GTTTATTCGA 26668 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||| ||||| |||||||| ||||||||||| || | || | || |||| | Sbjct 32912 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 32971 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 32972 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 33031 Query 66176 CGGTTCCAAGTATATGGC 66193 ||||||| ||| || || Sbjct 33032 AGGTTCCAGGTAAATAGC 33049 >seq6424 Length=433988 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| |||||||||||||| || ||||| || || || || | Sbjct 17768 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 17709 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| |||||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 17708 TGAGCCAGAATATTGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 17649 Query 36300 C 36300 | Sbjct 17648 C 17648 Score = 105 bits (116), Expect = 9e-18 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 16936 ATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 16877 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 ||||| || || |||||||| | || ||||||||||| |||||| Sbjct 16876 AATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCT 16831 >seq11817 Length=981421 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | || |||||||| |||||||||||||| || || | || || Sbjct 476697 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCGGGCATGAGTCCTCTTTTCTTT 476756 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||| ||||| | ||||| ||||| || |||||||||||||| || || |||||||| Sbjct 476757 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCCACAGCAGCAAAGGC 476815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658032724373840