Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq15027 143 2e-29 >seq15027 Length=2440082 Score = 143 bits (158), Expect = 2e-29 Identities = 141/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||| |||||| ||| ||||||| || || || ||||| |||||||||||||| || | Sbjct 2417411 TCAGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGG 2417352 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | |||| ||||||| |||||||||||||||||| Sbjct 2417351 GCACACCCAGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATTCA 2417292 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGG 21168 ||||||| |||||||| | |||| || || ||||| ||||| | | ||| || | || Sbjct 2417291 CCACGTAGAACTGACAGAGGGCGTGGCACGGGGGGAGGGCCATGAGAGGGAGATCTGAGG 2417232 Query 21169 GG 21170 || Sbjct 2417231 GG 2417230 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 21027 GCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGC 21086 || |||||||||||||| || || || || ||||||||||| | |||| ||||||| | Sbjct 2417109 GCATAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATGTCTCCCGACCGTTGGTACAAC 2417050 Query 21087 TGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGA 21146 ||||||||||||||||| ||||||| ||||| || | |||| || || ||||| Sbjct 2417049 TGGCAGGACAGCTCCCCATTCACCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGG 2416990 Query 21147 GCCATCCGCGCGAGGTCCGCGGGG 21170 ||||| | | ||| || | |||| Sbjct 2416989 GCCATGAGAGGGAGATCTGAGGGG 2416966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427687234608480