Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq15871 98.7 1e-15
seq7844 96.9 3e-15
seq6202 96.9 3e-15
seq11172 95.1 1e-14
seq8498 91.5 1e-13
seq10972 82.4 8e-11
>seq15871
Length=707613
Score = 98.7 bits (108), Expect = 1e-15
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| |||||||| || ||||| || || || |||| | ||||| |||||||| ||
Sbjct 26948 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCC 27007
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| |||||| | ||||| || || || ||||| |||||||| ||| || ||
Sbjct 27008 GCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 27067
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| ||||||||||||| | ||| | ||||| ||||||| ||
Sbjct 27068 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAGGGTC 27127
Query 139748 TTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 27128 TTCACGAAGATCTGCAT 27144
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606
|| |||| || ||||| | || |||||||| || ||||| || || || || | |
Sbjct 26699 AAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGC 26758
Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666
||||| |||||||| || ||| |||||| | ||||| || || || ||||| |||
Sbjct 26759 CCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCT 26818
Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726
||||| ||| || || | | || | ||||| ||||||||||||| | |||
Sbjct 26819 TTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 26878
Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
| ||||| || |||| || || ||||| || |||||
Sbjct 26879 ATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 26916
>seq7844
Length=401405
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| |||||||| || ||||| ||||| | |||| ||||| ||||| || ||
Sbjct 263334 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 263275
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| |||| || | ||||| || ||||| |||||||| || || ||| || ||
Sbjct 263274 GCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 263215
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| ||||||||||||| | ||| | ||||||||||||| ||
Sbjct 263214 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTC 263155
Query 139748 TTTACGAATATTTGCATA 139765
|| ||||| || ||||||
Sbjct 263154 TTCACGAAGATCTGCATA 263137
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| |||||||| || ||||| ||||| | |||| ||||| ||||| || ||
Sbjct 263106 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 263047
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| |||| || | ||||| || || || |||||||| || || ||| || ||
Sbjct 263046 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 262987
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| ||||||||||||| | ||| | ||||||||||||| ||
Sbjct 262986 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 262927
Query 139748 TTTACGAATATTTGCAT 139764
|| ||||| ||||||||
Sbjct 262926 TTCACGAAGATTTGCAT 262910
>seq6202
Length=441370
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| |||||||| || ||||| ||||| | |||| ||||| ||||| || ||
Sbjct 3257 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 3198
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| |||| || | ||||| || ||||| |||||||| || || ||| || ||
Sbjct 3197 GCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 3138
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| ||||||||||||| | ||| | ||||||||||||| ||
Sbjct 3137 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 3078
Query 139748 TTTACGAATATTTGCATA 139765
|| ||||| || ||||||
Sbjct 3077 TTCACGAAGATCTGCATA 3060
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| |||||||| || ||||| ||||| | |||| ||||| ||||| || ||
Sbjct 3485 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 3426
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| |||| || | ||||| || ||||| |||||||| || || ||| || ||
Sbjct 3425 GCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 3366
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| ||||||||||||| | ||| | ||||||||||||| ||
Sbjct 3365 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 3306
Query 139748 TTTACGAATATTTGCATA 139765
|| ||||| || ||||||
Sbjct 3305 TTCACGAAGATCTGCATA 3288
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| |||||||| || ||||| ||||| | |||| ||||| ||||| || ||
Sbjct 3713 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 3654
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| |||| || | ||||| || ||||| |||||||| || || ||| || ||
Sbjct 3653 GCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 3594
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| ||||||||||||| | ||| | ||||||||||||| ||
Sbjct 3593 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 3534
Query 139748 TTTACGAATATTTGCATA 139765
|| ||||| || ||||||
Sbjct 3533 TTCACGAAGATCTGCATA 3516
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| |||||||| || ||||| ||||| | |||| ||||| ||||| || ||
Sbjct 3941 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 3882
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| |||| || | ||||| || ||||| |||||||| || || ||| || ||
Sbjct 3881 GCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 3822
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| ||||||||||||| | ||| | ||||||||||||| ||
Sbjct 3821 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 3762
Query 139748 TTTACGAATATTTGCATA 139765
|| ||||| || ||||||
Sbjct 3761 TTCACGAAGATCTGCATA 3744
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| |||||||| || ||||| ||||| | |||| ||||| ||||| || ||
Sbjct 4169 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 4110
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| |||| || | ||||| || ||||| |||||||| || || ||| || ||
Sbjct 4109 GCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 4050
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| ||||||||||||| | ||| | ||||||||||||| ||
Sbjct 4049 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 3990
Query 139748 TTTACGAATATTTGCATA 139765
|| ||||| || ||||||
Sbjct 3989 TTCACGAAGATCTGCATA 3972
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| |||||||| || ||||| ||||| | |||| ||||| ||||| || ||
Sbjct 4397 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 4338
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| |||| || | ||||| || ||||| |||||||| || || ||| || ||
Sbjct 4337 GCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 4278
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| ||||||||||||| | ||| | ||||||||||||| ||
Sbjct 4277 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 4218
Query 139748 TTTACGAATATTTGCATA 139765
|| ||||| || ||||||
Sbjct 4217 TTCACGAAGATCTGCATA 4200
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| |||||||| || ||||| ||||| | |||| ||||| ||||| || ||
Sbjct 4625 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 4566
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| |||| || | ||||| || || || |||||||| || || ||| || ||
Sbjct 4565 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 4506
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| ||||||||||||| | ||| | ||||||||||||| ||
Sbjct 4505 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 4446
Query 139748 TTTACGAATATTTGCATA 139765
|| ||||| || ||||||
Sbjct 4445 TTCACGAAGATCTGCATA 4428
>seq11172
Length=1040880
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGT 139610
||| |||| |||| || ||||| ||||||||||| || || || || | || | |
Sbjct 4337 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCA-T 4395
Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670
|||| || || || |||| | ||||||| | |||||| || ||||| || ||||| || |
Sbjct 4396 CTTCCAGTTGCTTGCCAGAAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTAT 4455
Query 139671 CGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730
| ||| || |||| | ||| | ||| || | |||||| ||||| | || | |
Sbjct 4456 CCTGGATCTTGGCCTTTACATTTTCTATTGTTTCTGAGGGCTCGACCTCGAGAGTGATGG 4515
Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||| || |||| || || ||||| || |||||
Sbjct 4516 TCTTCCCAGTCAGGGTCTTCACGAAAATCTGCAT 4549
>seq8498
Length=279317
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGT 139610
||| |||| |||| || ||||| ||||||||||| || || || || | || | |
Sbjct 98924 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGTACGTCCA-T 98866
Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670
|||| || || || |||||| ||||||| | |||||| || ||||| || ||||| || |
Sbjct 98865 CTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTAT 98806
Query 139671 CGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730
| ||| || |||| | ||| | ||| || | ||| || ||||| | || | |
Sbjct 98805 CCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGG 98746
Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||| || |||| || || || || || |||||
Sbjct 98745 TCTTCCCCGTCAGGGTCTTCACAAAAATCTGCAT 98712
>seq10972
Length=1569106
Score = 82.4 bits (90), Expect = 8e-11
Identities = 151/221 (68%), Gaps = 8/221 (4%)
Strand=Plus/Minus
Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGA-- 139608
||| |||| |||| || ||||| ||||||||||| || || || || | || |
Sbjct 1317879 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATA 1317820
Query 139609 -----GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCT 139663
||||| || || || |||||| ||||||| | |||||| || ||||| || |||
Sbjct 1317819 CGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCT 1317760
Query 139664 TCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACG 139723
|| || || ||| || |||| | ||| | ||| || | ||| || ||||| |
Sbjct 1317759 TCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGA 1317700
Query 139724 GTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | ||||| || |||| || || ||||| || |||||
Sbjct 1317699 GTAATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 1317659
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495958425179200
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