Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq6424 134 2e-26
seq5291 131 2e-25
seq11817 98.7 1e-15
>seq6424
Length=433988
Score = 134 bits (148), Expect = 2e-26
Identities = 104/124 (84%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||| ||||| ||||| ||||| |||||||||||||| || ||||| || || || || |
Sbjct 17768 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 17709
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| ||||| ||||| |||||||| || || ||||||||||| ||||| |||||||||||||
Sbjct 17708 TGAGCCAGAATATTGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 17649
Query 50102 CAAC 50105
| ||
Sbjct 17648 CTAC 17645
Score = 102 bits (112), Expect = 1e-16
Identities = 86/106 (81%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279
|||||||| ||||| || || | |||||||||||||| ||||| |||||||| |||||
Sbjct 16936 ATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 16877
Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325
|| || || || |||||||| | || ||||||||||| ||||||
Sbjct 16876 AATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCT 16831
>seq5291
Length=463539
Score = 131 bits (144), Expect = 2e-25
Identities = 111/137 (81%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119
|| ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| |
Sbjct 20686 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 20745
Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179
|| |||||||||||||| || ||||||||||| || || ||||| || || | | ||||
Sbjct 20746 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 20805
Query 79180 CTATTTCTAAGACCGTA 79196
|| ||||| | ||| ||
Sbjct 20806 CTGTTTCTTATACCATA 20822
Score = 105 bits (116), Expect = 1e-17
Identities = 136/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359
|| ||||||||||| || | || | ||| | ||||| || || || || ||||| |||
Sbjct 26481 TAGGTTTCATAAGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCATAA 26540
Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419
||||||||||| || |||| |||||| | || || ||| | || ||||| || ||
Sbjct 26541 TAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGTAC 26600
Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479
| | |||||||| || ||||| | ||||| || ||||| ||||| || | ||| |
Sbjct 26601 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCGATGGGGCGATGGCGT 26660
Query 79480 TTATTAGA 79487
||||| ||
Sbjct 26661 TTATTCGA 26668
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998
||||| ||||| |||||||| ||||||||||| || | || || || |||| | |||
Sbjct 32916 ACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 32975
Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058
|| || |||||||| ||||| || | ||| |||||| | | || || ||||||| |||
Sbjct 32976 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGT 33035
Query 80059 TCCAAGTATATGGC 80072
|||| ||| || ||
Sbjct 33036 TCCAGGTAAATAGC 33049
>seq11817
Length=981421
Score = 98.7 bits (108), Expect = 1e-15
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043
|| ||||| || || || || |||||||| |||||||||||||| || || | || ||
Sbjct 476697 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCGGGCATGAGTCCTCTTTTCTTT 476756
Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103
||||| ||||| | ||||| || || || ||||| |||||||| || || ||||||||
Sbjct 476757 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCCACAGCAGCAAAGGCC 476816
Query 50104 AC 50105
||
Sbjct 476817 AC 476818
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718115934442640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |