Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq6424 120 3e-22 >seq6424 Length=433988 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || ||||| || | || ||||||| ||||||||| | Sbjct 17768 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 17709 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||||| || || || ||||||||||| || || || ||||| ||||| | Sbjct 17708 TGAGCCAGAATATTGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 17649 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | |||||||| Sbjct 17648 CTACCACACGTTCTCC 17633 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || ||||| | ||||| || | ||||| || ||||| |||||||| || || Sbjct 19306 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 19247 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 |||||||| |||||||||||||| || ||||||||| Sbjct 19246 TCCAGTGAAATATTTTCCATAAAGTCAAATGGATTT 19211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478486944338640